miRNA display CGI


Results 81 - 98 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1576 3' -58.5 NC_001347.2 + 185182 0.7 0.731557
Target:  5'- -cUUGCCUUCGGCGCGU--ACCGuGCc -3'
miRNA:   3'- guGGCGGGGGCCGUGCAuuUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 188332 1.11 0.002024
Target:  5'- cCACCGCCCCCGGCACGUAAACCGAGCg -3'
miRNA:   3'- -GUGGCGGGGGCCGUGCAUUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 189843 0.77 0.344301
Target:  5'- gACCGCCCUCGGUcccCGUGAGCgGuAGCg -3'
miRNA:   3'- gUGGCGGGGGCCGu--GCAUUUGgC-UCG- -5'
1576 3' -58.5 NC_001347.2 + 190123 0.66 0.910093
Target:  5'- -gUCGCCCCagaagagCGGUACGgggccgcAACCGGGUu -3'
miRNA:   3'- guGGCGGGG-------GCCGUGCau-----UUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 191221 0.77 0.32496
Target:  5'- gCACCGCCgcagcccggcuuuCCCGGCgucgugaaaggcacgGCGUAAugCGGGCa -3'
miRNA:   3'- -GUGGCGG-------------GGGCCG---------------UGCAUUugGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 192175 0.69 0.768175
Target:  5'- cCGCCGUCUCCGGaugaGCGgccgcGGCgCGGGCu -3'
miRNA:   3'- -GUGGCGGGGGCCg---UGCau---UUG-GCUCG- -5'
1576 3' -58.5 NC_001347.2 + 192970 0.69 0.768175
Target:  5'- gCGgCGCgCCCCGGCGuucaGUcgcGGCUGAGCg -3'
miRNA:   3'- -GUgGCG-GGGGCCGUg---CAu--UUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 194502 0.68 0.819674
Target:  5'- cCGCCGCUgCaCGGCAUcau-GCUGGGCg -3'
miRNA:   3'- -GUGGCGGgG-GCCGUGcauuUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 196411 0.67 0.872691
Target:  5'- aACCGacaCCUgGGCGCGUuucaccuGCCG-GCg -3'
miRNA:   3'- gUGGCg--GGGgCCGUGCAuu-----UGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 197070 0.67 0.865659
Target:  5'- uCGgCGCUCUCGG-ACGccGAGCUGAGCa -3'
miRNA:   3'- -GUgGCGGGGGCCgUGCa-UUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 197152 0.76 0.390176
Target:  5'- uCGCCGCCCCggggcccuCGGUGCGcu-ACCGGGCc -3'
miRNA:   3'- -GUGGCGGGG--------GCCGUGCauuUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 199510 0.7 0.731557
Target:  5'- uCAUCGCCCUCGGCAgCGgacggcucACCuGGCg -3'
miRNA:   3'- -GUGGCGGGGGCCGU-GCauu-----UGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 199617 0.77 0.344301
Target:  5'- cCACCGCCgCCGGCGCcGUuc-UCGGGCa -3'
miRNA:   3'- -GUGGCGGgGGCCGUG-CAuuuGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 200112 0.7 0.703249
Target:  5'- gGCCGgCUCCGGCGgGcAAACCGAa- -3'
miRNA:   3'- gUGGCgGGGGCCGUgCaUUUGGCUcg -5'
1576 3' -58.5 NC_001347.2 + 208850 0.7 0.731557
Target:  5'- cCAgCGCCCgCCGGCgAUGUAAcaGCUG-GCg -3'
miRNA:   3'- -GUgGCGGG-GGCCG-UGCAUU--UGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 222771 0.74 0.492971
Target:  5'- cCGCCGCCCauaccaUCGGCAUGUcgGCCGAcaaaucGCa -3'
miRNA:   3'- -GUGGCGGG------GGCCGUGCAuuUGGCU------CG- -5'
1576 3' -58.5 NC_001347.2 + 225587 0.73 0.520607
Target:  5'- aGCCGCCCgUGGCcgggagaagACGgagGAGCCGAGa -3'
miRNA:   3'- gUGGCGGGgGCCG---------UGCa--UUUGGCUCg -5'
1576 3' -58.5 NC_001347.2 + 226787 0.68 0.803046
Target:  5'- gGCCcCaCCUCGGCAUGccgGcGCCGGGCg -3'
miRNA:   3'- gUGGcG-GGGGCCGUGCa--UuUGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.