Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1576 | 3' | -58.5 | NC_001347.2 | + | 182848 | 0.69 | 0.776191 |
Target: 5'- aGCuCGCCCUCGcGCGcCGUGggaucggcuucgaGAUCGAGCu -3' miRNA: 3'- gUG-GCGGGGGC-CGU-GCAU-------------UUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 181533 | 0.67 | 0.858437 |
Target: 5'- gACuCGCCCCUGGCcACGcaccuguGGCCgcagGAGCu -3' miRNA: 3'- gUG-GCGGGGGCCG-UGCau-----UUGG----CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 178239 | 0.67 | 0.865659 |
Target: 5'- aCACUGCCCCCcGUugG---ACCagGAGCu -3' miRNA: 3'- -GUGGCGGGGGcCGugCauuUGG--CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 177564 | 0.66 | 0.896986 |
Target: 5'- aCGCCGCCaacaUGGCguaauugACGgugagaacucggAGACCGAGCg -3' miRNA: 3'- -GUGGCGGgg--GCCG-------UGCa-----------UUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 176194 | 0.68 | 0.82776 |
Target: 5'- gCACCGCCUCCGaacGCuCGUGAGCaacaGucGGCa -3' miRNA: 3'- -GUGGCGGGGGC---CGuGCAUUUGg---C--UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 172540 | 0.67 | 0.860623 |
Target: 5'- -cCCGCUggCUCGGCGCGgcuguauuauuagacGCCGGGCg -3' miRNA: 3'- guGGCGG--GGGCCGUGCauu------------UGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 156630 | 0.69 | 0.750053 |
Target: 5'- uCGCCGCUggCGGCGCcgcuGCCGGGCc -3' miRNA: 3'- -GUGGCGGggGCCGUGcauuUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 155760 | 0.66 | 0.886167 |
Target: 5'- aCGCCGCCUUccucaaguaCGuGCACGgcGACUGcGCg -3' miRNA: 3'- -GUGGCGGGG---------GC-CGUGCauUUGGCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 155563 | 0.69 | 0.78586 |
Target: 5'- aCGCggaGCCCgCGGCugGUA---CGAGCg -3' miRNA: 3'- -GUGg--CGGGgGCCGugCAUuugGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 153786 | 0.68 | 0.835686 |
Target: 5'- aCGCCGCUCa-GGC-CGUGGuaguCCGAGUc -3' miRNA: 3'- -GUGGCGGGggCCGuGCAUUu---GGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 151338 | 0.7 | 0.731557 |
Target: 5'- aCGCCGCaggCUCUgguGGCGCGUGGGCCcAGCc -3' miRNA: 3'- -GUGGCG---GGGG---CCGUGCAUUUGGcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 141831 | 0.71 | 0.645377 |
Target: 5'- gGCCGCCaCUgUGGCGCGUGAAUCGuuGGUa -3' miRNA: 3'- gUGGCGG-GG-GCCGUGCAUUUGGC--UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 139919 | 0.68 | 0.835686 |
Target: 5'- uCACCGCgaucugaUCCGcGCGCu--GACCGAGCu -3' miRNA: 3'- -GUGGCGg------GGGC-CGUGcauUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 136847 | 0.66 | 0.898834 |
Target: 5'- -uCCGCCCCuaCGGgGCGUc-GCCuAGCa -3' miRNA: 3'- guGGCGGGG--GCCgUGCAuuUGGcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 136282 | 0.71 | 0.655088 |
Target: 5'- cCACCGCCgcggcccaugCCCGGCACG-GGGCuCGcGCu -3' miRNA: 3'- -GUGGCGG----------GGGCCGUGCaUUUG-GCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 135934 | 0.7 | 0.684094 |
Target: 5'- aACCGggaCCCCGGUGCGggGgucccagcccgGCCGGGCc -3' miRNA: 3'- gUGGCg--GGGGCCGUGCauU-----------UGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 135796 | 0.69 | 0.768175 |
Target: 5'- -cCCGUCCauuccgCGGCGgGUGGACCGGGa -3' miRNA: 3'- guGGCGGGg-----GCCGUgCAUUUGGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 135581 | 0.66 | 0.907204 |
Target: 5'- cCACCGuCCaCCCGGCccaccuaccgucguCGUcgGCCGAccGCc -3' miRNA: 3'- -GUGGC-GG-GGGCCGu-------------GCAuuUGGCU--CG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 135496 | 0.71 | 0.655088 |
Target: 5'- -cCCGCUCCCGGaGCuccuGACCGGGCc -3' miRNA: 3'- guGGCGGGGGCCgUGcau-UUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 135213 | 0.78 | 0.302434 |
Target: 5'- gCGCCGaCCCCGGCugGgcGGCCGAu- -3' miRNA: 3'- -GUGGCgGGGGCCGugCauUUGGCUcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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