miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1576 3' -58.5 NC_001347.2 + 82796 0.66 0.891969
Target:  5'- uCACCGaCCgCCCGG-ACGUGcucaAACCgcgucguGAGCg -3'
miRNA:   3'- -GUGGC-GG-GGGCCgUGCAU----UUGG-------CUCG- -5'
1576 3' -58.5 NC_001347.2 + 82000 0.66 0.904855
Target:  5'- uCACUGCCa-CGGcCACG-AAACCGAcagGCg -3'
miRNA:   3'- -GUGGCGGggGCC-GUGCaUUUGGCU---CG- -5'
1576 3' -58.5 NC_001347.2 + 81640 0.7 0.71275
Target:  5'- gCGCCGCCgCCGGCcuCGgu-ACCGAa- -3'
miRNA:   3'- -GUGGCGGgGGCCGu-GCauuUGGCUcg -5'
1576 3' -58.5 NC_001347.2 + 78601 0.69 0.768175
Target:  5'- --aCGCCUCgCGGCGCGaggacuccaUGAGCCuGGGCg -3'
miRNA:   3'- gugGCGGGG-GCCGUGC---------AUUUGG-CUCG- -5'
1576 3' -58.5 NC_001347.2 + 78423 0.82 0.16569
Target:  5'- cCGCCGCCaCCCGGCccgGCGgcGcCCGAGCg -3'
miRNA:   3'- -GUGGCGG-GGGCCG---UGCauUuGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 78327 0.69 0.740848
Target:  5'- aACCGUCUacuaCCcGCGCGUGGuCCGGGCg -3'
miRNA:   3'- gUGGCGGG----GGcCGUGCAUUuGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 77731 0.74 0.5104
Target:  5'- gUACCGCUgCUGG-ACGUGAagaccaaGCCGAGCg -3'
miRNA:   3'- -GUGGCGGgGGCCgUGCAUU-------UGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 73990 0.67 0.858437
Target:  5'- gACUGaCCCaCgCGGCAUGUAcGCCGuccGCg -3'
miRNA:   3'- gUGGC-GGG-G-GCCGUGCAUuUGGCu--CG- -5'
1576 3' -58.5 NC_001347.2 + 66595 0.67 0.879528
Target:  5'- gGCCGUUgCCGGCaacuuGCGacAACCgGAGCa -3'
miRNA:   3'- gUGGCGGgGGCCG-----UGCauUUGG-CUCG- -5'
1576 3' -58.5 NC_001347.2 + 65867 0.66 0.892603
Target:  5'- gGCUgGCCUUCGGCACGcuggcGGGCCGAccGCc -3'
miRNA:   3'- gUGG-CGGGGGCCGUGCa----UUUGGCU--CG- -5'
1576 3' -58.5 NC_001347.2 + 65764 0.67 0.879528
Target:  5'- -cCCGgCaCCCGaGCACGUAcACCgcugGAGCu -3'
miRNA:   3'- guGGCgG-GGGC-CGUGCAUuUGG----CUCG- -5'
1576 3' -58.5 NC_001347.2 + 53370 0.69 0.750053
Target:  5'- --aUGCCCCaaaCGGCuuCG-AAACCGAGCg -3'
miRNA:   3'- gugGCGGGG---GCCGu-GCaUUUGGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 47776 0.73 0.529955
Target:  5'- cCGCCguGCCUCCGGUugGU-GGCCG-GCg -3'
miRNA:   3'- -GUGG--CGGGGGCCGugCAuUUGGCuCG- -5'
1576 3' -58.5 NC_001347.2 + 41149 0.67 0.858437
Target:  5'- -cCCGUCCCCcGCGCGgaaauccGCCGcGGCg -3'
miRNA:   3'- guGGCGGGGGcCGUGCauu----UGGC-UCG- -5'
1576 3' -58.5 NC_001347.2 + 40239 0.67 0.879528
Target:  5'- cCACaCGCCcgcgacacaCCCGGCACGacacACCcGGCa -3'
miRNA:   3'- -GUG-GCGG---------GGGCCGUGCauu-UGGcUCG- -5'
1576 3' -58.5 NC_001347.2 + 39801 0.67 0.861348
Target:  5'- aGCCGCCuCCCgGGCGCGcacccaucuaggUGGAcgcccgacauccauuCCGGGCc -3'
miRNA:   3'- gUGGCGG-GGG-CCGUGC------------AUUU---------------GGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 39378 0.71 0.674454
Target:  5'- aCGCCGUggCCCGGCGuCGUcguAGCCGcAGCa -3'
miRNA:   3'- -GUGGCGg-GGGCCGU-GCAu--UUGGC-UCG- -5'
1576 3' -58.5 NC_001347.2 + 39103 0.66 0.90307
Target:  5'- gCGgCGUCaCCC-GCGCGUAGAauccguacggccguCCGAGCg -3'
miRNA:   3'- -GUgGCGG-GGGcCGUGCAUUU--------------GGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 38681 0.68 0.824544
Target:  5'- uGCCgGCCCaccgCCGGCGCagcucccguCCGAGCg -3'
miRNA:   3'- gUGG-CGGG----GGCCGUGcauuu----GGCUCG- -5'
1576 3' -58.5 NC_001347.2 + 38498 0.68 0.794519
Target:  5'- gCACCGCgCCCaGCGCcagccAGCCGcAGCa -3'
miRNA:   3'- -GUGGCGgGGGcCGUGcau--UUGGC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.