Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1576 | 3' | -58.5 | NC_001347.2 | + | 135581 | 0.66 | 0.907204 |
Target: 5'- cCACCGuCCaCCCGGCccaccuaccgucguCGUcgGCCGAccGCc -3' miRNA: 3'- -GUGGC-GG-GGGCCGu-------------GCAuuUGGCU--CG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 90860 | 0.66 | 0.910664 |
Target: 5'- cCACCGCCgCCGccaucauguuGCGCGgaGACUcGGCc -3' miRNA: 3'- -GUGGCGGgGGC----------CGUGCauUUGGcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 102303 | 0.66 | 0.910664 |
Target: 5'- gCugUGCCaCCCGGUGCu---GCaCGAGCc -3' miRNA: 3'- -GugGCGG-GGGCCGUGcauuUG-GCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 4879 | 0.66 | 0.910664 |
Target: 5'- gCAUCGCCCCgaGGCGCugcucugAAGCCaAGUg -3' miRNA: 3'- -GUGGCGGGGg-CCGUGca-----UUUGGcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 112847 | 0.66 | 0.912929 |
Target: 5'- gGCCGCUa-CGGCGCcggGAuacaugacgggcacuGCCGAGCg -3' miRNA: 3'- gUGGCGGggGCCGUGca-UU---------------UGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 84937 | 0.66 | 0.892603 |
Target: 5'- gACgGCa--UGGCGCGUAAACUGAGg -3' miRNA: 3'- gUGgCGgggGCCGUGCAUUUGGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 82796 | 0.66 | 0.891969 |
Target: 5'- uCACCGaCCgCCCGG-ACGUGcucaAACCgcgucguGAGCg -3' miRNA: 3'- -GUGGC-GG-GGGCCgUGCAU----UUGG-------CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 13701 | 0.67 | 0.865659 |
Target: 5'- gCACCGUCaUCGGCACGUGcucuuuuuugaAAuCCGAGa -3' miRNA: 3'- -GUGGCGGgGGCCGUGCAU-----------UU-GGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 196411 | 0.67 | 0.872691 |
Target: 5'- aACCGacaCCUgGGCGCGUuucaccuGCCG-GCg -3' miRNA: 3'- gUGGCg--GGGgCCGUGCAuu-----UGGCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 197070 | 0.67 | 0.865659 |
Target: 5'- uCGgCGCUCUCGG-ACGccGAGCUGAGCa -3' miRNA: 3'- -GUgGCGGGGGCCgUGCa-UUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 178239 | 0.67 | 0.865659 |
Target: 5'- aCACUGCCCCCcGUugG---ACCagGAGCu -3' miRNA: 3'- -GUGGCGGGGGcCGugCauuUGG--CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 2487 | 0.67 | 0.872691 |
Target: 5'- gCGCCGCgCUgugGGCGCGcGAGCCGcacgGGCa -3' miRNA: 3'- -GUGGCGgGGg--CCGUGCaUUUGGC----UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 40239 | 0.67 | 0.879528 |
Target: 5'- cCACaCGCCcgcgacacaCCCGGCACGacacACCcGGCa -3' miRNA: 3'- -GUG-GCGG---------GGGCCGUGCauu-UGGcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 909 | 0.67 | 0.879528 |
Target: 5'- -cCCGCCCCuUGGuCGCGgccGCgGGGCc -3' miRNA: 3'- guGGCGGGG-GCC-GUGCauuUGgCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 66595 | 0.67 | 0.879528 |
Target: 5'- gGCCGUUgCCGGCaacuuGCGacAACCgGAGCa -3' miRNA: 3'- gUGGCGGgGGCCG-----UGCauUUGG-CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 1871 | 0.66 | 0.886167 |
Target: 5'- gGCCGUgCgUCGGCACcUGAACC-AGCg -3' miRNA: 3'- gUGGCGgG-GGCCGUGcAUUUGGcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 65764 | 0.67 | 0.879528 |
Target: 5'- -cCCGgCaCCCGaGCACGUAcACCgcugGAGCu -3' miRNA: 3'- guGGCgG-GGGC-CGUGCAUuUGG----CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 38010 | 0.66 | 0.886167 |
Target: 5'- cCGCCGCgcggCCUCGGCGgCGggcGCCGAcucGCg -3' miRNA: 3'- -GUGGCG----GGGGCCGU-GCauuUGGCU---CG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 155760 | 0.66 | 0.886167 |
Target: 5'- aCGCCGCCUUccucaaguaCGuGCACGgcGACUGcGCg -3' miRNA: 3'- -GUGGCGGGG---------GC-CGUGCauUUGGCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 38447 | 0.66 | 0.886167 |
Target: 5'- cCGCCGUCCCCGucGC-CGgccccGCCGcGCa -3' miRNA: 3'- -GUGGCGGGGGC--CGuGCauu--UGGCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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