Results 81 - 98 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1576 | 3' | -58.5 | NC_001347.2 | + | 176194 | 0.68 | 0.82776 |
Target: 5'- gCACCGCCUCCGaacGCuCGUGAGCaacaGucGGCa -3' miRNA: 3'- -GUGGCGGGGGC---CGuGCAUUUGg---C--UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 194502 | 0.68 | 0.819674 |
Target: 5'- cCGCCGCUgCaCGGCAUcau-GCUGGGCg -3' miRNA: 3'- -GUGGCGGgG-GCCGUGcauuUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 13900 | 0.68 | 0.819674 |
Target: 5'- gGCC-CUCCacaGGCGCGuUGGACgGGGCg -3' miRNA: 3'- gUGGcGGGGg--CCGUGC-AUUUGgCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 18944 | 0.68 | 0.808095 |
Target: 5'- cUACUGCCCaCgGGCGCGcgcaagacaaccaGAACUGGGCc -3' miRNA: 3'- -GUGGCGGG-GgCCGUGCa------------UUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 109826 | 0.68 | 0.803046 |
Target: 5'- uCGCCGCCaCCGGCaagACGccuugcCCGGGCc -3' miRNA: 3'- -GUGGCGGgGGCCG---UGCauuu--GGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 85337 | 0.68 | 0.835686 |
Target: 5'- gCGCCGCCgCCaGCGcCGUcgcccgcggcuAGGCCGAGa -3' miRNA: 3'- -GUGGCGGgGGcCGU-GCA-----------UUUGGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 153786 | 0.68 | 0.835686 |
Target: 5'- aCGCCGCUCa-GGC-CGUGGuaguCCGAGUc -3' miRNA: 3'- -GUGGCGGGggCCGuGCAUUu---GGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 197070 | 0.67 | 0.865659 |
Target: 5'- uCGgCGCUCUCGG-ACGccGAGCUGAGCa -3' miRNA: 3'- -GUgGCGGGGGCCgUGCa-UUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 196411 | 0.67 | 0.872691 |
Target: 5'- aACCGacaCCUgGGCGCGUuucaccuGCCG-GCg -3' miRNA: 3'- gUGGCg--GGGgCCGUGCAuu-----UGGCuCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 13701 | 0.67 | 0.865659 |
Target: 5'- gCACCGUCaUCGGCACGUGcucuuuuuugaAAuCCGAGa -3' miRNA: 3'- -GUGGCGGgGGCCGUGCAU-----------UU-GGCUCg -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 41149 | 0.67 | 0.858437 |
Target: 5'- -cCCGUCCCCcGCGCGgaaauccGCCGcGGCg -3' miRNA: 3'- guGGCGGGGGcCGUGCauu----UGGC-UCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 39801 | 0.67 | 0.861348 |
Target: 5'- aGCCGCCuCCCgGGCGCGcacccaucuaggUGGAcgcccgacauccauuCCGGGCc -3' miRNA: 3'- gUGGCGG-GGG-CCGUGC------------AUUU---------------GGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 172540 | 0.67 | 0.860623 |
Target: 5'- -cCCGCUggCUCGGCGCGgcuguauuauuagacGCCGGGCg -3' miRNA: 3'- guGGCGG--GGGCCGUGCauu------------UGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 82928 | 0.67 | 0.858437 |
Target: 5'- cCAUgGCCCCCucGCACGUGGAUaaGGUg -3' miRNA: 3'- -GUGgCGGGGGc-CGUGCAUUUGgcUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 34580 | 0.67 | 0.858437 |
Target: 5'- gCugCaGCCagaCCGGaGCGgugagcgGAGCCGAGCa -3' miRNA: 3'- -GugG-CGGg--GGCCgUGCa------UUUGGCUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 181533 | 0.67 | 0.858437 |
Target: 5'- gACuCGCCCCUGGCcACGcaccuguGGCCgcagGAGCu -3' miRNA: 3'- gUG-GCGGGGGCCG-UGCau-----UUGG----CUCG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 73990 | 0.67 | 0.858437 |
Target: 5'- gACUGaCCCaCgCGGCAUGUAcGCCGuccGCg -3' miRNA: 3'- gUGGC-GGG-G-GCCGUGCAUuUGGCu--CG- -5' |
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1576 | 3' | -58.5 | NC_001347.2 | + | 226787 | 0.68 | 0.803046 |
Target: 5'- gGCCcCaCCUCGGCAUGccgGcGCCGGGCg -3' miRNA: 3'- gUGGcG-GGGGCCGUGCa--UuUGGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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