miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15760 3' -51.6 NC_004065.1 + 224242 0.66 0.997329
Target:  5'- cUCCUGcgcCCGG-CGAgcgGGAggggaagcaacagcuGCGGAGCAGCg -3'
miRNA:   3'- -AGGAU---GGCUaGCU---UCU---------------CGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 168168 0.66 0.997146
Target:  5'- cCCUuCCGcgCGggGcgcgacAGCGGcGCGACg -3'
miRNA:   3'- aGGAuGGCuaGCuuC------UCGUCuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 201137 0.66 0.997146
Target:  5'- gUCC-GCCGAcUCGggGcgccAGCAGuccucgucacgcAGCAGCg -3'
miRNA:   3'- -AGGaUGGCU-AGCuuC----UCGUC------------UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 113014 0.66 0.997146
Target:  5'- cCCUGCCGAUCGu---GCcGAuCAACg -3'
miRNA:   3'- aGGAUGGCUAGCuucuCGuCUcGUUG- -5'
15760 3' -51.6 NC_004065.1 + 113819 0.66 0.996644
Target:  5'- cUCUGCgGGUUGggGAGgCGGAGgGGu -3'
miRNA:   3'- aGGAUGgCUAGCuuCUC-GUCUCgUUg -5'
15760 3' -51.6 NC_004065.1 + 179654 0.66 0.99659
Target:  5'- gCCUcuugagaGCUGggCGAGGAGCAGuGCc-- -3'
miRNA:   3'- aGGA-------UGGCuaGCUUCUCGUCuCGuug -5'
15760 3' -51.6 NC_004065.1 + 184847 0.66 0.99607
Target:  5'- gUUCgGCCGAgggaUCGAGucGAGCGG-GCGGCg -3'
miRNA:   3'- -AGGaUGGCU----AGCUU--CUCGUCuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 18563 0.66 0.99607
Target:  5'- aCCUcuCCGGcgacuccucCGAGGAGCGGAGgGGCc -3'
miRNA:   3'- aGGAu-GGCUa--------GCUUCUCGUCUCgUUG- -5'
15760 3' -51.6 NC_004065.1 + 133358 0.66 0.995883
Target:  5'- uUCUUGCCGGUgacgcgaaaccaguUGAAGAGUAcGGGCGcgaACg -3'
miRNA:   3'- -AGGAUGGCUA--------------GCUUCUCGU-CUCGU---UG- -5'
15760 3' -51.6 NC_004065.1 + 23988 0.66 0.995419
Target:  5'- gUCCU--CGG-CGAuGAGaCAGAGCGACg -3'
miRNA:   3'- -AGGAugGCUaGCUuCUC-GUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 82854 0.66 0.995419
Target:  5'- aCUUGCCGGUggCGAAGAGCAc-GCcGCu -3'
miRNA:   3'- aGGAUGGCUA--GCUUCUCGUcuCGuUG- -5'
15760 3' -51.6 NC_004065.1 + 207873 0.66 0.995419
Target:  5'- cCCUcACCGucacGUCGAAGgguAGCGGGGCcgGGCu -3'
miRNA:   3'- aGGA-UGGC----UAGCUUC---UCGUCUCG--UUG- -5'
15760 3' -51.6 NC_004065.1 + 114902 0.66 0.994682
Target:  5'- cCCUACC---CGGAGAGCGGGGauaucccaAGCg -3'
miRNA:   3'- aGGAUGGcuaGCUUCUCGUCUCg-------UUG- -5'
15760 3' -51.6 NC_004065.1 + 144235 0.66 0.994603
Target:  5'- aCCUcaccguacggaugACCGAgaacgccaCGcAGAGCAGuAGCAGCa -3'
miRNA:   3'- aGGA-------------UGGCUa-------GCuUCUCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 74101 0.66 0.994524
Target:  5'- --gUGCCGAaacagguccuaGAGGAGCAGGGCAc- -3'
miRNA:   3'- aggAUGGCUag---------CUUCUCGUCUCGUug -5'
15760 3' -51.6 NC_004065.1 + 39592 0.67 0.993852
Target:  5'- aUCCgGCaGAUCGggGGGgAGAGuCAAa -3'
miRNA:   3'- -AGGaUGgCUAGCuuCUCgUCUC-GUUg -5'
15760 3' -51.6 NC_004065.1 + 177032 0.67 0.993306
Target:  5'- cUCCUcCgGAUCGAGGAcaccguagacacacaGCAGAGUgucaGACu -3'
miRNA:   3'- -AGGAuGgCUAGCUUCU---------------CGUCUCG----UUG- -5'
15760 3' -51.6 NC_004065.1 + 31885 0.67 0.992921
Target:  5'- gCCUGCUGGuguacUCG-AGAGCGGGccugacGCGGCg -3'
miRNA:   3'- aGGAUGGCU-----AGCuUCUCGUCU------CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 82381 0.67 0.992921
Target:  5'- ---cGCUGAagGggGAGCAGGGCu-- -3'
miRNA:   3'- aggaUGGCUagCuuCUCGUCUCGuug -5'
15760 3' -51.6 NC_004065.1 + 1468 0.67 0.992921
Target:  5'- uUUCUGC--GUCGAcAGAGCAGAagGCAACc -3'
miRNA:   3'- -AGGAUGgcUAGCU-UCUCGUCU--CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.