Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15760 | 3' | -51.6 | NC_004065.1 | + | 80673 | 0.69 | 0.973614 |
Target: 5'- cCCUGCCGAUCuuGGuGaUAGaAGCGGCg -3' miRNA: 3'- aGGAUGGCUAGcuUCuC-GUC-UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 77634 | 0.69 | 0.973614 |
Target: 5'- aCCUGgCGAUCaaGAAGAGCAaGGCGc- -3' miRNA: 3'- aGGAUgGCUAG--CUUCUCGUcUCGUug -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 64872 | 0.69 | 0.96782 |
Target: 5'- aUCCUGCgGAccgcggcgcgcgUCGGAGA--AGAGCGGCg -3' miRNA: 3'- -AGGAUGgCU------------AGCUUCUcgUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 79699 | 0.69 | 0.973614 |
Target: 5'- aUCC-ACCGGcUGAAGAGCAacGGGCAc- -3' miRNA: 3'- -AGGaUGGCUaGCUUCUCGU--CUCGUug -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 62285 | 0.69 | 0.973614 |
Target: 5'- cCCUAUCGAccUUGAagAGAGCGGGuCGACa -3' miRNA: 3'- aGGAUGGCU--AGCU--UCUCGUCUcGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 31819 | 0.69 | 0.973614 |
Target: 5'- gCCUGCCGGacgCGGAGuuCAGGGcCGACc -3' miRNA: 3'- aGGAUGGCUa--GCUUCucGUCUC-GUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 106157 | 0.7 | 0.957521 |
Target: 5'- aCCUGCgGcgCGu---GCGGAGCGACa -3' miRNA: 3'- aGGAUGgCuaGCuucuCGUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 25931 | 0.7 | 0.949522 |
Target: 5'- uUCCcGCCGG-CGAAGAGgAGAGUuuCu -3' miRNA: 3'- -AGGaUGGCUaGCUUCUCgUCUCGuuG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 114969 | 0.7 | 0.949522 |
Target: 5'- cUCCagaACCGAugaguUCGGAGAGguGAggGCGACu -3' miRNA: 3'- -AGGa--UGGCU-----AGCUUCUCguCU--CGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 71839 | 0.7 | 0.953638 |
Target: 5'- -gCUGCUGGU-GGAGAGCGGAGgGAUc -3' miRNA: 3'- agGAUGGCUAgCUUCUCGUCUCgUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 152836 | 0.7 | 0.961176 |
Target: 5'- gUCCUACguCGAUCGAGGucggcAGCcAGAGCcACc -3' miRNA: 3'- -AGGAUG--GCUAGCUUC-----UCG-UCUCGuUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 7653 | 0.7 | 0.961176 |
Target: 5'- gUUCaACCgGAUCGAAGAGCu--GCGACu -3' miRNA: 3'- -AGGaUGG-CUAGCUUCUCGucuCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 180144 | 0.71 | 0.919793 |
Target: 5'- gUCUGgaGGUCGAuucGAGCaAGAGCAGCg -3' miRNA: 3'- aGGAUggCUAGCUu--CUCG-UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 108746 | 0.71 | 0.919793 |
Target: 5'- aUCCUGgCGAUgCGGAcGAGCAaGAGCAc- -3' miRNA: 3'- -AGGAUgGCUA-GCUU-CUCGU-CUCGUug -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 90717 | 0.71 | 0.925355 |
Target: 5'- cUCCUcGCCGucguuggaGUCGcAGAGCgcucGGAGCAGCg -3' miRNA: 3'- -AGGA-UGGC--------UAGCuUCUCG----UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 202199 | 0.71 | 0.927511 |
Target: 5'- ---gGCCGAgcacccgcaggcacaUCGGAGGGCuGGGCGACg -3' miRNA: 3'- aggaUGGCU---------------AGCUUCUCGuCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 129123 | 0.71 | 0.935747 |
Target: 5'- aCCUGCCGGaCGAucAGCAGugcGCGGCg -3' miRNA: 3'- aGGAUGGCUaGCUucUCGUCu--CGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 96731 | 0.71 | 0.935747 |
Target: 5'- cUCCUcucucuggACgCGggCGAGggcGAGCAGGGCGACg -3' miRNA: 3'- -AGGA--------UG-GCuaGCUU---CUCGUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 50703 | 0.71 | 0.925355 |
Target: 5'- cUCCUGCUGAUcuucCGAAGAGUccAGGGUGAg -3' miRNA: 3'- -AGGAUGGCUA----GCUUCUCG--UCUCGUUg -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 227499 | 0.72 | 0.907942 |
Target: 5'- gUCUACCGAggCGAAGAGCGGuuUGAUg -3' miRNA: 3'- aGGAUGGCUa-GCUUCUCGUCucGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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