miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15760 3' -51.6 NC_004065.1 + 77634 0.69 0.973614
Target:  5'- aCCUGgCGAUCaaGAAGAGCAaGGCGc- -3'
miRNA:   3'- aGGAUgGCUAG--CUUCUCGUcUCGUug -5'
15760 3' -51.6 NC_004065.1 + 64872 0.69 0.96782
Target:  5'- aUCCUGCgGAccgcggcgcgcgUCGGAGA--AGAGCGGCg -3'
miRNA:   3'- -AGGAUGgCU------------AGCUUCUcgUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 31819 0.69 0.973614
Target:  5'- gCCUGCCGGacgCGGAGuuCAGGGcCGACc -3'
miRNA:   3'- aGGAUGGCUa--GCUUCucGUCUC-GUUG- -5'
15760 3' -51.6 NC_004065.1 + 62285 0.69 0.973614
Target:  5'- cCCUAUCGAccUUGAagAGAGCGGGuCGACa -3'
miRNA:   3'- aGGAUGGCU--AGCU--UCUCGUCUcGUUG- -5'
15760 3' -51.6 NC_004065.1 + 65207 0.68 0.978842
Target:  5'- gUUCUACCGccucggguugacccCGAAGAGCAcGGCGACc -3'
miRNA:   3'- -AGGAUGGCua------------GCUUCUCGUcUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 107744 0.68 0.986295
Target:  5'- aUCCUcgGCCGGcggaugccccaggUCGGugucggcgcgGGAGCAGcGGCGACa -3'
miRNA:   3'- -AGGA--UGGCU-------------AGCU----------UCUCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 167978 0.68 0.982873
Target:  5'- aCCUGCCGcuUCGGcaccaccAGCAGcAGCAGCg -3'
miRNA:   3'- aGGAUGGCu-AGCUuc-----UCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 120207 0.68 0.984746
Target:  5'- cCCUGCCGAUCuucuuGGGCGGAccGCGc- -3'
miRNA:   3'- aGGAUGGCUAGcuu--CUCGUCU--CGUug -5'
15760 3' -51.6 NC_004065.1 + 36620 0.68 0.987871
Target:  5'- cCCcACCGAUgacgaucUGggGcaugaGGCAGGGCGGCa -3'
miRNA:   3'- aGGaUGGCUA-------GCuuC-----UCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 29689 0.68 0.984566
Target:  5'- gUCCUcguucuugucaucGCCGGUCGAGcGGCGGAcGCcGCc -3'
miRNA:   3'- -AGGA-------------UGGCUAGCUUcUCGUCU-CGuUG- -5'
15760 3' -51.6 NC_004065.1 + 229392 0.68 0.988021
Target:  5'- cCCaccCCGGggucCGAAGAGCGGugaAGCGACu -3'
miRNA:   3'- aGGau-GGCUa---GCUUCUCGUC---UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 102304 0.68 0.988021
Target:  5'- uUCC-AC---UCGGAGAGCgAGAGCAGCc -3'
miRNA:   3'- -AGGaUGgcuAGCUUCUCG-UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 97940 0.68 0.980617
Target:  5'- uUCCU-CCGGcggcagcgcgUCGAAGuGCuugcggaAGAGCAGCa -3'
miRNA:   3'- -AGGAuGGCU----------AGCUUCuCG-------UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 66081 0.67 0.99231
Target:  5'- aCCUGgCGAUCGAGucGUuccugcacgcgcuggGGGGCGACa -3'
miRNA:   3'- aGGAUgGCUAGCUUcuCG---------------UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 149029 0.67 0.990723
Target:  5'- aCCUcggGCUGAccUCG-GGAGCGG-GCGACg -3'
miRNA:   3'- aGGA---UGGCU--AGCuUCUCGUCuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 82381 0.67 0.992921
Target:  5'- ---cGCUGAagGggGAGCAGGGCu-- -3'
miRNA:   3'- aggaUGGCUagCuuCUCGUCUCGuug -5'
15760 3' -51.6 NC_004065.1 + 1468 0.67 0.992921
Target:  5'- uUUCUGC--GUCGAcAGAGCAGAagGCAACc -3'
miRNA:   3'- -AGGAUGgcUAGCU-UCUCGUCU--CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 177032 0.67 0.993306
Target:  5'- cUCCUcCgGAUCGAGGAcaccguagacacacaGCAGAGUgucaGACu -3'
miRNA:   3'- -AGGAuGgCUAGCUUCU---------------CGUCUCG----UUG- -5'
15760 3' -51.6 NC_004065.1 + 39592 0.67 0.993852
Target:  5'- aUCCgGCaGAUCGggGGGgAGAGuCAAa -3'
miRNA:   3'- -AGGaUGgCUAGCuuCUCgUCUC-GUUg -5'
15760 3' -51.6 NC_004065.1 + 96246 0.67 0.989439
Target:  5'- cUCCcgGCUcguGGUCGAGGAugcggauggacgGCGGGGCGGCc -3'
miRNA:   3'- -AGGa-UGG---CUAGCUUCU------------CGUCUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.