miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15760 3' -51.6 NC_004065.1 + 147956 1.11 0.008399
Target:  5'- aUCCUACCGAUCGAAGAGCAGAGCAACu -3'
miRNA:   3'- -AGGAUGGCUAGCUUCUCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 56595 0.75 0.762797
Target:  5'- cUUCUGCCGucGUCGAGcGAGCAG-GCGGCc -3'
miRNA:   3'- -AGGAUGGC--UAGCUU-CUCGUCuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 112780 0.72 0.901656
Target:  5'- cCCagUGCCGGUUGAAGAaGCGcAGCAGCc -3'
miRNA:   3'- aGG--AUGGCUAGCUUCU-CGUcUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 130846 0.72 0.901656
Target:  5'- -aCUACCG--CGAGGAGguGcAGCAGCa -3'
miRNA:   3'- agGAUGGCuaGCUUCUCguC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 227499 0.72 0.907942
Target:  5'- gUCUACCGAggCGAAGAGCGGuuUGAUg -3'
miRNA:   3'- aGGAUGGCUa-GCUUCUCGUCucGUUG- -5'
15760 3' -51.6 NC_004065.1 + 108746 0.71 0.919793
Target:  5'- aUCCUGgCGAUgCGGAcGAGCAaGAGCAc- -3'
miRNA:   3'- -AGGAUgGCUA-GCUU-CUCGU-CUCGUug -5'
15760 3' -51.6 NC_004065.1 + 180144 0.71 0.919793
Target:  5'- gUCUGgaGGUCGAuucGAGCaAGAGCAGCg -3'
miRNA:   3'- aGGAUggCUAGCUu--CUCG-UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 90717 0.71 0.925355
Target:  5'- cUCCUcGCCGucguuggaGUCGcAGAGCgcucGGAGCAGCg -3'
miRNA:   3'- -AGGA-UGGC--------UAGCuUCUCG----UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 50703 0.71 0.925355
Target:  5'- cUCCUGCUGAUcuucCGAAGAGUccAGGGUGAg -3'
miRNA:   3'- -AGGAUGGCUA----GCUUCUCG--UCUCGUUg -5'
15760 3' -51.6 NC_004065.1 + 202199 0.71 0.927511
Target:  5'- ---gGCCGAgcacccgcaggcacaUCGGAGGGCuGGGCGACg -3'
miRNA:   3'- aggaUGGCU---------------AGCUUCUCGuCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 96731 0.71 0.935747
Target:  5'- cUCCUcucucuggACgCGggCGAGggcGAGCAGGGCGACg -3'
miRNA:   3'- -AGGA--------UG-GCuaGCUU---CUCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 129123 0.71 0.935747
Target:  5'- aCCUGCCGGaCGAucAGCAGugcGCGGCg -3'
miRNA:   3'- aGGAUGGCUaGCUucUCGUCu--CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 114969 0.7 0.949522
Target:  5'- cUCCagaACCGAugaguUCGGAGAGguGAggGCGACu -3'
miRNA:   3'- -AGGa--UGGCU-----AGCUUCUCguCU--CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 25931 0.7 0.949522
Target:  5'- uUCCcGCCGG-CGAAGAGgAGAGUuuCu -3'
miRNA:   3'- -AGGaUGGCUaGCUUCUCgUCUCGuuG- -5'
15760 3' -51.6 NC_004065.1 + 71839 0.7 0.953638
Target:  5'- -gCUGCUGGU-GGAGAGCGGAGgGAUc -3'
miRNA:   3'- agGAUGGCUAgCUUCUCGUCUCgUUG- -5'
15760 3' -51.6 NC_004065.1 + 106157 0.7 0.957521
Target:  5'- aCCUGCgGcgCGu---GCGGAGCGACa -3'
miRNA:   3'- aGGAUGgCuaGCuucuCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 7653 0.7 0.961176
Target:  5'- gUUCaACCgGAUCGAAGAGCu--GCGACu -3'
miRNA:   3'- -AGGaUGG-CUAGCUUCUCGucuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 152836 0.7 0.961176
Target:  5'- gUCCUACguCGAUCGAGGucggcAGCcAGAGCcACc -3'
miRNA:   3'- -AGGAUG--GCUAGCUUC-----UCG-UCUCGuUG- -5'
15760 3' -51.6 NC_004065.1 + 64872 0.69 0.96782
Target:  5'- aUCCUGCgGAccgcggcgcgcgUCGGAGA--AGAGCGGCg -3'
miRNA:   3'- -AGGAUGgCU------------AGCUUCUcgUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 77634 0.69 0.973614
Target:  5'- aCCUGgCGAUCaaGAAGAGCAaGGCGc- -3'
miRNA:   3'- aGGAUgGCUAG--CUUCUCGUcUCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.