Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15760 | 3' | -51.6 | NC_004065.1 | + | 149029 | 0.67 | 0.990723 |
Target: 5'- aCCUcggGCUGAccUCG-GGAGCGG-GCGACg -3' miRNA: 3'- aGGA---UGGCU--AGCuUCUCGUCuCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 29254 | 0.67 | 0.991881 |
Target: 5'- aCC-GCCGcgCGAcGAG-AGAGCGACc -3' miRNA: 3'- aGGaUGGCuaGCUuCUCgUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 11614 | 0.67 | 0.991881 |
Target: 5'- --aUACC-AUCGggGGGCguuGGAGUAGCu -3' miRNA: 3'- aggAUGGcUAGCuuCUCG---UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 66081 | 0.67 | 0.99231 |
Target: 5'- aCCUGgCGAUCGAGucGUuccugcacgcgcuggGGGGCGACa -3' miRNA: 3'- aGGAUgGCUAGCUUcuCG---------------UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 31885 | 0.67 | 0.992921 |
Target: 5'- gCCUGCUGGuguacUCG-AGAGCGGGccugacGCGGCg -3' miRNA: 3'- aGGAUGGCU-----AGCuUCUCGUCU------CGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 82381 | 0.67 | 0.992921 |
Target: 5'- ---cGCUGAagGggGAGCAGGGCu-- -3' miRNA: 3'- aggaUGGCUagCuuCUCGUCUCGuug -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 1468 | 0.67 | 0.992921 |
Target: 5'- uUUCUGC--GUCGAcAGAGCAGAagGCAACc -3' miRNA: 3'- -AGGAUGgcUAGCU-UCUCGUCU--CGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 177032 | 0.67 | 0.993306 |
Target: 5'- cUCCUcCgGAUCGAGGAcaccguagacacacaGCAGAGUgucaGACu -3' miRNA: 3'- -AGGAuGgCUAGCUUCU---------------CGUCUCG----UUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 39592 | 0.67 | 0.993852 |
Target: 5'- aUCCgGCaGAUCGggGGGgAGAGuCAAa -3' miRNA: 3'- -AGGaUGgCUAGCuuCUCgUCUC-GUUg -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 74101 | 0.66 | 0.994524 |
Target: 5'- --gUGCCGAaacagguccuaGAGGAGCAGGGCAc- -3' miRNA: 3'- aggAUGGCUag---------CUUCUCGUCUCGUug -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 144235 | 0.66 | 0.994603 |
Target: 5'- aCCUcaccguacggaugACCGAgaacgccaCGcAGAGCAGuAGCAGCa -3' miRNA: 3'- aGGA-------------UGGCUa-------GCuUCUCGUC-UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 114902 | 0.66 | 0.994682 |
Target: 5'- cCCUACC---CGGAGAGCGGGGauaucccaAGCg -3' miRNA: 3'- aGGAUGGcuaGCUUCUCGUCUCg-------UUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 23988 | 0.66 | 0.995419 |
Target: 5'- gUCCU--CGG-CGAuGAGaCAGAGCGACg -3' miRNA: 3'- -AGGAugGCUaGCUuCUC-GUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 207873 | 0.66 | 0.995419 |
Target: 5'- cCCUcACCGucacGUCGAAGgguAGCGGGGCcgGGCu -3' miRNA: 3'- aGGA-UGGC----UAGCUUC---UCGUCUCG--UUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 82854 | 0.66 | 0.995419 |
Target: 5'- aCUUGCCGGUggCGAAGAGCAc-GCcGCu -3' miRNA: 3'- aGGAUGGCUA--GCUUCUCGUcuCGuUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 133358 | 0.66 | 0.995883 |
Target: 5'- uUCUUGCCGGUgacgcgaaaccaguUGAAGAGUAcGGGCGcgaACg -3' miRNA: 3'- -AGGAUGGCUA--------------GCUUCUCGU-CUCGU---UG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 18563 | 0.66 | 0.99607 |
Target: 5'- aCCUcuCCGGcgacuccucCGAGGAGCGGAGgGGCc -3' miRNA: 3'- aGGAu-GGCUa--------GCUUCUCGUCUCgUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 184847 | 0.66 | 0.99607 |
Target: 5'- gUUCgGCCGAgggaUCGAGucGAGCGG-GCGGCg -3' miRNA: 3'- -AGGaUGGCU----AGCUU--CUCGUCuCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 179654 | 0.66 | 0.99659 |
Target: 5'- gCCUcuugagaGCUGggCGAGGAGCAGuGCc-- -3' miRNA: 3'- aGGA-------UGGCuaGCUUCUCGUCuCGuug -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 113819 | 0.66 | 0.996644 |
Target: 5'- cUCUGCgGGUUGggGAGgCGGAGgGGu -3' miRNA: 3'- aGGAUGgCUAGCuuCUC-GUCUCgUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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