Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15760 | 3' | -51.6 | NC_004065.1 | + | 66081 | 0.67 | 0.99231 |
Target: 5'- aCCUGgCGAUCGAGucGUuccugcacgcgcuggGGGGCGACa -3' miRNA: 3'- aGGAUgGCUAGCUUcuCG---------------UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 11614 | 0.67 | 0.991881 |
Target: 5'- --aUACC-AUCGggGGGCguuGGAGUAGCu -3' miRNA: 3'- aggAUGGcUAGCuuCUCG---UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 29254 | 0.67 | 0.991881 |
Target: 5'- aCC-GCCGcgCGAcGAG-AGAGCGACc -3' miRNA: 3'- aGGaUGGCuaGCUuCUCgUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 177206 | 0.67 | 0.990723 |
Target: 5'- cCCUACCGGUCacuuuugccGAGGGCGGGcGCGc- -3' miRNA: 3'- aGGAUGGCUAGc--------UUCUCGUCU-CGUug -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 84085 | 0.67 | 0.990723 |
Target: 5'- aUCCUGCCGAcCGu----CAGGGCGGCc -3' miRNA: 3'- -AGGAUGGCUaGCuucucGUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 149029 | 0.67 | 0.990723 |
Target: 5'- aCCUcggGCUGAccUCG-GGAGCGG-GCGACg -3' miRNA: 3'- aGGA---UGGCU--AGCuUCUCGUCuCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 45301 | 0.67 | 0.990723 |
Target: 5'- cUCCU-CCGAUCGAc-AGCAucGGCAGCc -3' miRNA: 3'- -AGGAuGGCUAGCUucUCGUc-UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 223789 | 0.67 | 0.9906 |
Target: 5'- gCUUGCCGuAUCGcuuGAGCAGucuagcuAGCGGCu -3' miRNA: 3'- aGGAUGGC-UAGCuu-CUCGUC-------UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 67643 | 0.67 | 0.9906 |
Target: 5'- cCCggacAUCGAcgcgucggugaugUCGggGAGCGGcGGCGGCg -3' miRNA: 3'- aGGa---UGGCU-------------AGCuuCUCGUC-UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 96246 | 0.67 | 0.989439 |
Target: 5'- cUCCcgGCUcguGGUCGAGGAugcggauggacgGCGGGGCGGCc -3' miRNA: 3'- -AGGa-UGG---CUAGCUUCU------------CGUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 59127 | 0.67 | 0.989439 |
Target: 5'- aCCgACCGAgCGAGcGAGCGcGAgGCGACg -3' miRNA: 3'- aGGaUGGCUaGCUU-CUCGU-CU-CGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 229392 | 0.68 | 0.988021 |
Target: 5'- cCCaccCCGGggucCGAAGAGCGGugaAGCGACu -3' miRNA: 3'- aGGau-GGCUa---GCUUCUCGUC---UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 102304 | 0.68 | 0.988021 |
Target: 5'- uUCC-AC---UCGGAGAGCgAGAGCAGCc -3' miRNA: 3'- -AGGaUGgcuAGCUUCUCG-UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 36620 | 0.68 | 0.987871 |
Target: 5'- cCCcACCGAUgacgaucUGggGcaugaGGCAGGGCGGCa -3' miRNA: 3'- aGGaUGGCUA-------GCuuC-----UCGUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 107744 | 0.68 | 0.986295 |
Target: 5'- aUCCUcgGCCGGcggaugccccaggUCGGugucggcgcgGGAGCAGcGGCGACa -3' miRNA: 3'- -AGGA--UGGCU-------------AGCU----------UCUCGUC-UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 120207 | 0.68 | 0.984746 |
Target: 5'- cCCUGCCGAUCuucuuGGGCGGAccGCGc- -3' miRNA: 3'- aGGAUGGCUAGcuu--CUCGUCU--CGUug -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 29689 | 0.68 | 0.984566 |
Target: 5'- gUCCUcguucuugucaucGCCGGUCGAGcGGCGGAcGCcGCc -3' miRNA: 3'- -AGGA-------------UGGCUAGCUUcUCGUCU-CGuUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 167978 | 0.68 | 0.982873 |
Target: 5'- aCCUGCCGcuUCGGcaccaccAGCAGcAGCAGCg -3' miRNA: 3'- aGGAUGGCu-AGCUuc-----UCGUC-UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 97940 | 0.68 | 0.980617 |
Target: 5'- uUCCU-CCGGcggcagcgcgUCGAAGuGCuugcggaAGAGCAGCa -3' miRNA: 3'- -AGGAuGGCU----------AGCUUCuCG-------UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 65207 | 0.68 | 0.978842 |
Target: 5'- gUUCUACCGccucggguugacccCGAAGAGCAcGGCGACc -3' miRNA: 3'- -AGGAUGGCua------------GCUUCUCGUcUCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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