miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15760 3' -51.6 NC_004065.1 + 1468 0.67 0.992921
Target:  5'- uUUCUGC--GUCGAcAGAGCAGAagGCAACc -3'
miRNA:   3'- -AGGAUGgcUAGCU-UCUCGUCU--CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 7653 0.7 0.961176
Target:  5'- gUUCaACCgGAUCGAAGAGCu--GCGACu -3'
miRNA:   3'- -AGGaUGG-CUAGCUUCUCGucuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 11614 0.67 0.991881
Target:  5'- --aUACC-AUCGggGGGCguuGGAGUAGCu -3'
miRNA:   3'- aggAUGGcUAGCuuCUCG---UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 18563 0.66 0.99607
Target:  5'- aCCUcuCCGGcgacuccucCGAGGAGCGGAGgGGCc -3'
miRNA:   3'- aGGAu-GGCUa--------GCUUCUCGUCUCgUUG- -5'
15760 3' -51.6 NC_004065.1 + 23988 0.66 0.995419
Target:  5'- gUCCU--CGG-CGAuGAGaCAGAGCGACg -3'
miRNA:   3'- -AGGAugGCUaGCUuCUC-GUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 25931 0.7 0.949522
Target:  5'- uUCCcGCCGG-CGAAGAGgAGAGUuuCu -3'
miRNA:   3'- -AGGaUGGCUaGCUUCUCgUCUCGuuG- -5'
15760 3' -51.6 NC_004065.1 + 29254 0.67 0.991881
Target:  5'- aCC-GCCGcgCGAcGAG-AGAGCGACc -3'
miRNA:   3'- aGGaUGGCuaGCUuCUCgUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 29689 0.68 0.984566
Target:  5'- gUCCUcguucuugucaucGCCGGUCGAGcGGCGGAcGCcGCc -3'
miRNA:   3'- -AGGA-------------UGGCUAGCUUcUCGUCU-CGuUG- -5'
15760 3' -51.6 NC_004065.1 + 31819 0.69 0.973614
Target:  5'- gCCUGCCGGacgCGGAGuuCAGGGcCGACc -3'
miRNA:   3'- aGGAUGGCUa--GCUUCucGUCUC-GUUG- -5'
15760 3' -51.6 NC_004065.1 + 31885 0.67 0.992921
Target:  5'- gCCUGCUGGuguacUCG-AGAGCGGGccugacGCGGCg -3'
miRNA:   3'- aGGAUGGCU-----AGCuUCUCGUCU------CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 36620 0.68 0.987871
Target:  5'- cCCcACCGAUgacgaucUGggGcaugaGGCAGGGCGGCa -3'
miRNA:   3'- aGGaUGGCUA-------GCuuC-----UCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 39592 0.67 0.993852
Target:  5'- aUCCgGCaGAUCGggGGGgAGAGuCAAa -3'
miRNA:   3'- -AGGaUGgCUAGCuuCUCgUCUC-GUUg -5'
15760 3' -51.6 NC_004065.1 + 45301 0.67 0.990723
Target:  5'- cUCCU-CCGAUCGAc-AGCAucGGCAGCc -3'
miRNA:   3'- -AGGAuGGCUAGCUucUCGUc-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 50703 0.71 0.925355
Target:  5'- cUCCUGCUGAUcuucCGAAGAGUccAGGGUGAg -3'
miRNA:   3'- -AGGAUGGCUA----GCUUCUCG--UCUCGUUg -5'
15760 3' -51.6 NC_004065.1 + 56595 0.75 0.762797
Target:  5'- cUUCUGCCGucGUCGAGcGAGCAG-GCGGCc -3'
miRNA:   3'- -AGGAUGGC--UAGCUU-CUCGUCuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 59127 0.67 0.989439
Target:  5'- aCCgACCGAgCGAGcGAGCGcGAgGCGACg -3'
miRNA:   3'- aGGaUGGCUaGCUU-CUCGU-CU-CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 62285 0.69 0.973614
Target:  5'- cCCUAUCGAccUUGAagAGAGCGGGuCGACa -3'
miRNA:   3'- aGGAUGGCU--AGCU--UCUCGUCUcGUUG- -5'
15760 3' -51.6 NC_004065.1 + 64872 0.69 0.96782
Target:  5'- aUCCUGCgGAccgcggcgcgcgUCGGAGA--AGAGCGGCg -3'
miRNA:   3'- -AGGAUGgCU------------AGCUUCUcgUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 65207 0.68 0.978842
Target:  5'- gUUCUACCGccucggguugacccCGAAGAGCAcGGCGACc -3'
miRNA:   3'- -AGGAUGGCua------------GCUUCUCGUcUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 66081 0.67 0.99231
Target:  5'- aCCUGgCGAUCGAGucGUuccugcacgcgcuggGGGGCGACa -3'
miRNA:   3'- aGGAUgGCUAGCUUcuCG---------------UCUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.