miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15760 3' -51.6 NC_004065.1 + 67643 0.67 0.9906
Target:  5'- cCCggacAUCGAcgcgucggugaugUCGggGAGCGGcGGCGGCg -3'
miRNA:   3'- aGGa---UGGCU-------------AGCuuCUCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 71839 0.7 0.953638
Target:  5'- -gCUGCUGGU-GGAGAGCGGAGgGAUc -3'
miRNA:   3'- agGAUGGCUAgCUUCUCGUCUCgUUG- -5'
15760 3' -51.6 NC_004065.1 + 74101 0.66 0.994524
Target:  5'- --gUGCCGAaacagguccuaGAGGAGCAGGGCAc- -3'
miRNA:   3'- aggAUGGCUag---------CUUCUCGUCUCGUug -5'
15760 3' -51.6 NC_004065.1 + 77634 0.69 0.973614
Target:  5'- aCCUGgCGAUCaaGAAGAGCAaGGCGc- -3'
miRNA:   3'- aGGAUgGCUAG--CUUCUCGUcUCGUug -5'
15760 3' -51.6 NC_004065.1 + 79699 0.69 0.973614
Target:  5'- aUCC-ACCGGcUGAAGAGCAacGGGCAc- -3'
miRNA:   3'- -AGGaUGGCUaGCUUCUCGU--CUCGUug -5'
15760 3' -51.6 NC_004065.1 + 80673 0.69 0.973614
Target:  5'- cCCUGCCGAUCuuGGuGaUAGaAGCGGCg -3'
miRNA:   3'- aGGAUGGCUAGcuUCuC-GUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 82381 0.67 0.992921
Target:  5'- ---cGCUGAagGggGAGCAGGGCu-- -3'
miRNA:   3'- aggaUGGCUagCuuCUCGUCUCGuug -5'
15760 3' -51.6 NC_004065.1 + 82854 0.66 0.995419
Target:  5'- aCUUGCCGGUggCGAAGAGCAc-GCcGCu -3'
miRNA:   3'- aGGAUGGCUA--GCUUCUCGUcuCGuUG- -5'
15760 3' -51.6 NC_004065.1 + 84085 0.67 0.990723
Target:  5'- aUCCUGCCGAcCGu----CAGGGCGGCc -3'
miRNA:   3'- -AGGAUGGCUaGCuucucGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 90717 0.71 0.925355
Target:  5'- cUCCUcGCCGucguuggaGUCGcAGAGCgcucGGAGCAGCg -3'
miRNA:   3'- -AGGA-UGGC--------UAGCuUCUCG----UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 96246 0.67 0.989439
Target:  5'- cUCCcgGCUcguGGUCGAGGAugcggauggacgGCGGGGCGGCc -3'
miRNA:   3'- -AGGa-UGG---CUAGCUUCU------------CGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 96731 0.71 0.935747
Target:  5'- cUCCUcucucuggACgCGggCGAGggcGAGCAGGGCGACg -3'
miRNA:   3'- -AGGA--------UG-GCuaGCUU---CUCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 97940 0.68 0.980617
Target:  5'- uUCCU-CCGGcggcagcgcgUCGAAGuGCuugcggaAGAGCAGCa -3'
miRNA:   3'- -AGGAuGGCU----------AGCUUCuCG-------UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 102304 0.68 0.988021
Target:  5'- uUCC-AC---UCGGAGAGCgAGAGCAGCc -3'
miRNA:   3'- -AGGaUGgcuAGCUUCUCG-UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 106157 0.7 0.957521
Target:  5'- aCCUGCgGcgCGu---GCGGAGCGACa -3'
miRNA:   3'- aGGAUGgCuaGCuucuCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 107744 0.68 0.986295
Target:  5'- aUCCUcgGCCGGcggaugccccaggUCGGugucggcgcgGGAGCAGcGGCGACa -3'
miRNA:   3'- -AGGA--UGGCU-------------AGCU----------UCUCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 108746 0.71 0.919793
Target:  5'- aUCCUGgCGAUgCGGAcGAGCAaGAGCAc- -3'
miRNA:   3'- -AGGAUgGCUA-GCUU-CUCGU-CUCGUug -5'
15760 3' -51.6 NC_004065.1 + 112780 0.72 0.901656
Target:  5'- cCCagUGCCGGUUGAAGAaGCGcAGCAGCc -3'
miRNA:   3'- aGG--AUGGCUAGCUUCU-CGUcUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 113014 0.66 0.997146
Target:  5'- cCCUGCCGAUCGu---GCcGAuCAACg -3'
miRNA:   3'- aGGAUGGCUAGCuucuCGuCUcGUUG- -5'
15760 3' -51.6 NC_004065.1 + 113819 0.66 0.996644
Target:  5'- cUCUGCgGGUUGggGAGgCGGAGgGGu -3'
miRNA:   3'- aGGAUGgCUAGCuuCUC-GUCUCgUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.