miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15760 3' -51.6 NC_004065.1 + 229392 0.68 0.988021
Target:  5'- cCCaccCCGGggucCGAAGAGCGGugaAGCGACu -3'
miRNA:   3'- aGGau-GGCUa---GCUUCUCGUC---UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 227499 0.72 0.907942
Target:  5'- gUCUACCGAggCGAAGAGCGGuuUGAUg -3'
miRNA:   3'- aGGAUGGCUa-GCUUCUCGUCucGUUG- -5'
15760 3' -51.6 NC_004065.1 + 224242 0.66 0.997329
Target:  5'- cUCCUGcgcCCGG-CGAgcgGGAggggaagcaacagcuGCGGAGCAGCg -3'
miRNA:   3'- -AGGAU---GGCUaGCU---UCU---------------CGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 223789 0.67 0.9906
Target:  5'- gCUUGCCGuAUCGcuuGAGCAGucuagcuAGCGGCu -3'
miRNA:   3'- aGGAUGGC-UAGCuu-CUCGUC-------UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 207873 0.66 0.995419
Target:  5'- cCCUcACCGucacGUCGAAGgguAGCGGGGCcgGGCu -3'
miRNA:   3'- aGGA-UGGC----UAGCUUC---UCGUCUCG--UUG- -5'
15760 3' -51.6 NC_004065.1 + 202199 0.71 0.927511
Target:  5'- ---gGCCGAgcacccgcaggcacaUCGGAGGGCuGGGCGACg -3'
miRNA:   3'- aggaUGGCU---------------AGCUUCUCGuCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 201137 0.66 0.997146
Target:  5'- gUCC-GCCGAcUCGggGcgccAGCAGuccucgucacgcAGCAGCg -3'
miRNA:   3'- -AGGaUGGCU-AGCuuC----UCGUC------------UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 184847 0.66 0.99607
Target:  5'- gUUCgGCCGAgggaUCGAGucGAGCGG-GCGGCg -3'
miRNA:   3'- -AGGaUGGCU----AGCUU--CUCGUCuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 180144 0.71 0.919793
Target:  5'- gUCUGgaGGUCGAuucGAGCaAGAGCAGCg -3'
miRNA:   3'- aGGAUggCUAGCUu--CUCG-UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 179654 0.66 0.99659
Target:  5'- gCCUcuugagaGCUGggCGAGGAGCAGuGCc-- -3'
miRNA:   3'- aGGA-------UGGCuaGCUUCUCGUCuCGuug -5'
15760 3' -51.6 NC_004065.1 + 177206 0.67 0.990723
Target:  5'- cCCUACCGGUCacuuuugccGAGGGCGGGcGCGc- -3'
miRNA:   3'- aGGAUGGCUAGc--------UUCUCGUCU-CGUug -5'
15760 3' -51.6 NC_004065.1 + 177032 0.67 0.993306
Target:  5'- cUCCUcCgGAUCGAGGAcaccguagacacacaGCAGAGUgucaGACu -3'
miRNA:   3'- -AGGAuGgCUAGCUUCU---------------CGUCUCG----UUG- -5'
15760 3' -51.6 NC_004065.1 + 168168 0.66 0.997146
Target:  5'- cCCUuCCGcgCGggGcgcgacAGCGGcGCGACg -3'
miRNA:   3'- aGGAuGGCuaGCuuC------UCGUCuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 167978 0.68 0.982873
Target:  5'- aCCUGCCGcuUCGGcaccaccAGCAGcAGCAGCg -3'
miRNA:   3'- aGGAUGGCu-AGCUuc-----UCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 152836 0.7 0.961176
Target:  5'- gUCCUACguCGAUCGAGGucggcAGCcAGAGCcACc -3'
miRNA:   3'- -AGGAUG--GCUAGCUUC-----UCG-UCUCGuUG- -5'
15760 3' -51.6 NC_004065.1 + 149029 0.67 0.990723
Target:  5'- aCCUcggGCUGAccUCG-GGAGCGG-GCGACg -3'
miRNA:   3'- aGGA---UGGCU--AGCuUCUCGUCuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 147956 1.11 0.008399
Target:  5'- aUCCUACCGAUCGAAGAGCAGAGCAACu -3'
miRNA:   3'- -AGGAUGGCUAGCUUCUCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 144235 0.66 0.994603
Target:  5'- aCCUcaccguacggaugACCGAgaacgccaCGcAGAGCAGuAGCAGCa -3'
miRNA:   3'- aGGA-------------UGGCUa-------GCuUCUCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 133358 0.66 0.995883
Target:  5'- uUCUUGCCGGUgacgcgaaaccaguUGAAGAGUAcGGGCGcgaACg -3'
miRNA:   3'- -AGGAUGGCUA--------------GCUUCUCGU-CUCGU---UG- -5'
15760 3' -51.6 NC_004065.1 + 130846 0.72 0.901656
Target:  5'- -aCUACCG--CGAGGAGguGcAGCAGCa -3'
miRNA:   3'- agGAUGGCuaGCUUCUCguC-UCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.