miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15760 3' -51.6 NC_004065.1 + 66081 0.67 0.99231
Target:  5'- aCCUGgCGAUCGAGucGUuccugcacgcgcuggGGGGCGACa -3'
miRNA:   3'- aGGAUgGCUAGCUUcuCG---------------UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 97940 0.68 0.980617
Target:  5'- uUCCU-CCGGcggcagcgcgUCGAAGuGCuugcggaAGAGCAGCa -3'
miRNA:   3'- -AGGAuGGCU----------AGCUUCuCG-------UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 29689 0.68 0.984566
Target:  5'- gUCCUcguucuugucaucGCCGGUCGAGcGGCGGAcGCcGCc -3'
miRNA:   3'- -AGGA-------------UGGCUAGCUUcUCGUCU-CGuUG- -5'
15760 3' -51.6 NC_004065.1 + 120207 0.68 0.984746
Target:  5'- cCCUGCCGAUCuucuuGGGCGGAccGCGc- -3'
miRNA:   3'- aGGAUGGCUAGcuu--CUCGUCU--CGUug -5'
15760 3' -51.6 NC_004065.1 + 96246 0.67 0.989439
Target:  5'- cUCCcgGCUcguGGUCGAGGAugcggauggacgGCGGGGCGGCc -3'
miRNA:   3'- -AGGa-UGG---CUAGCUUCU------------CGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 59127 0.67 0.989439
Target:  5'- aCCgACCGAgCGAGcGAGCGcGAgGCGACg -3'
miRNA:   3'- aGGaUGGCUaGCUU-CUCGU-CU-CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 67643 0.67 0.9906
Target:  5'- cCCggacAUCGAcgcgucggugaugUCGggGAGCGGcGGCGGCg -3'
miRNA:   3'- aGGa---UGGCU-------------AGCuuCUCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 45301 0.67 0.990723
Target:  5'- cUCCU-CCGAUCGAc-AGCAucGGCAGCc -3'
miRNA:   3'- -AGGAuGGCUAGCUucUCGUc-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 149029 0.67 0.990723
Target:  5'- aCCUcggGCUGAccUCG-GGAGCGG-GCGACg -3'
miRNA:   3'- aGGA---UGGCU--AGCuUCUCGUCuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 65207 0.68 0.978842
Target:  5'- gUUCUACCGccucggguugacccCGAAGAGCAcGGCGACc -3'
miRNA:   3'- -AGGAUGGCua------------GCUUCUCGUcUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 80673 0.69 0.973614
Target:  5'- cCCUGCCGAUCuuGGuGaUAGaAGCGGCg -3'
miRNA:   3'- aGGAUGGCUAGcuUCuC-GUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 77634 0.69 0.973614
Target:  5'- aCCUGgCGAUCaaGAAGAGCAaGGCGc- -3'
miRNA:   3'- aGGAUgGCUAG--CUUCUCGUcUCGUug -5'
15760 3' -51.6 NC_004065.1 + 112780 0.72 0.901656
Target:  5'- cCCagUGCCGGUUGAAGAaGCGcAGCAGCc -3'
miRNA:   3'- aGG--AUGGCUAGCUUCU-CGUcUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 50703 0.71 0.925355
Target:  5'- cUCCUGCUGAUcuucCGAAGAGUccAGGGUGAg -3'
miRNA:   3'- -AGGAUGGCUA----GCUUCUCG--UCUCGUUg -5'
15760 3' -51.6 NC_004065.1 + 96731 0.71 0.935747
Target:  5'- cUCCUcucucuggACgCGggCGAGggcGAGCAGGGCGACg -3'
miRNA:   3'- -AGGA--------UG-GCuaGCUU---CUCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 25931 0.7 0.949522
Target:  5'- uUCCcGCCGG-CGAAGAGgAGAGUuuCu -3'
miRNA:   3'- -AGGaUGGCUaGCUUCUCgUCUCGuuG- -5'
15760 3' -51.6 NC_004065.1 + 114969 0.7 0.949522
Target:  5'- cUCCagaACCGAugaguUCGGAGAGguGAggGCGACu -3'
miRNA:   3'- -AGGa--UGGCU-----AGCUUCUCguCU--CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 71839 0.7 0.953638
Target:  5'- -gCUGCUGGU-GGAGAGCGGAGgGAUc -3'
miRNA:   3'- agGAUGGCUAgCUUCUCGUCUCgUUG- -5'
15760 3' -51.6 NC_004065.1 + 152836 0.7 0.961176
Target:  5'- gUCCUACguCGAUCGAGGucggcAGCcAGAGCcACc -3'
miRNA:   3'- -AGGAUG--GCUAGCUUC-----UCG-UCUCGuUG- -5'
15760 3' -51.6 NC_004065.1 + 64872 0.69 0.96782
Target:  5'- aUCCUGCgGAccgcggcgcgcgUCGGAGA--AGAGCGGCg -3'
miRNA:   3'- -AGGAUGgCU------------AGCUUCUcgUCUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.