Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15760 | 3' | -51.6 | NC_004065.1 | + | 102304 | 0.68 | 0.988021 |
Target: 5'- uUCC-AC---UCGGAGAGCgAGAGCAGCc -3' miRNA: 3'- -AGGaUGgcuAGCUUCUCG-UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 229392 | 0.68 | 0.988021 |
Target: 5'- cCCaccCCGGggucCGAAGAGCGGugaAGCGACu -3' miRNA: 3'- aGGau-GGCUa---GCUUCUCGUC---UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 223789 | 0.67 | 0.9906 |
Target: 5'- gCUUGCCGuAUCGcuuGAGCAGucuagcuAGCGGCu -3' miRNA: 3'- aGGAUGGC-UAGCuu-CUCGUC-------UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 177206 | 0.67 | 0.990723 |
Target: 5'- cCCUACCGGUCacuuuugccGAGGGCGGGcGCGc- -3' miRNA: 3'- aGGAUGGCUAGc--------UUCUCGUCU-CGUug -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 84085 | 0.67 | 0.990723 |
Target: 5'- aUCCUGCCGAcCGu----CAGGGCGGCc -3' miRNA: 3'- -AGGAUGGCUaGCuucucGUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 29254 | 0.67 | 0.991881 |
Target: 5'- aCC-GCCGcgCGAcGAG-AGAGCGACc -3' miRNA: 3'- aGGaUGGCuaGCUuCUCgUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 11614 | 0.67 | 0.991881 |
Target: 5'- --aUACC-AUCGggGGGCguuGGAGUAGCu -3' miRNA: 3'- aggAUGGcUAGCuuCUCG---UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 31885 | 0.67 | 0.992921 |
Target: 5'- gCCUGCUGGuguacUCG-AGAGCGGGccugacGCGGCg -3' miRNA: 3'- aGGAUGGCU-----AGCuUCUCGUCU------CGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 79699 | 0.69 | 0.973614 |
Target: 5'- aUCC-ACCGGcUGAAGAGCAacGGGCAc- -3' miRNA: 3'- -AGGaUGGCUaGCUUCUCGU--CUCGUug -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 62285 | 0.69 | 0.973614 |
Target: 5'- cCCUAUCGAccUUGAagAGAGCGGGuCGACa -3' miRNA: 3'- aGGAUGGCU--AGCU--UCUCGUCUcGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 130846 | 0.72 | 0.901656 |
Target: 5'- -aCUACCG--CGAGGAGguGcAGCAGCa -3' miRNA: 3'- agGAUGGCuaGCUUCUCguC-UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 227499 | 0.72 | 0.907942 |
Target: 5'- gUCUACCGAggCGAAGAGCGGuuUGAUg -3' miRNA: 3'- aGGAUGGCUa-GCUUCUCGUCucGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 180144 | 0.71 | 0.919793 |
Target: 5'- gUCUGgaGGUCGAuucGAGCaAGAGCAGCg -3' miRNA: 3'- aGGAUggCUAGCUu--CUCG-UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 108746 | 0.71 | 0.919793 |
Target: 5'- aUCCUGgCGAUgCGGAcGAGCAaGAGCAc- -3' miRNA: 3'- -AGGAUgGCUA-GCUU-CUCGU-CUCGUug -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 90717 | 0.71 | 0.925355 |
Target: 5'- cUCCUcGCCGucguuggaGUCGcAGAGCgcucGGAGCAGCg -3' miRNA: 3'- -AGGA-UGGC--------UAGCuUCUCG----UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 202199 | 0.71 | 0.927511 |
Target: 5'- ---gGCCGAgcacccgcaggcacaUCGGAGGGCuGGGCGACg -3' miRNA: 3'- aggaUGGCU---------------AGCUUCUCGuCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 129123 | 0.71 | 0.935747 |
Target: 5'- aCCUGCCGGaCGAucAGCAGugcGCGGCg -3' miRNA: 3'- aGGAUGGCUaGCUucUCGUCu--CGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 106157 | 0.7 | 0.957521 |
Target: 5'- aCCUGCgGcgCGu---GCGGAGCGACa -3' miRNA: 3'- aGGAUGgCuaGCuucuCGUCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 7653 | 0.7 | 0.961176 |
Target: 5'- gUUCaACCgGAUCGAAGAGCu--GCGACu -3' miRNA: 3'- -AGGaUGG-CUAGCUUCUCGucuCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 31819 | 0.69 | 0.973614 |
Target: 5'- gCCUGCCGGacgCGGAGuuCAGGGcCGACc -3' miRNA: 3'- aGGAUGGCUa--GCUUCucGUCUC-GUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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