miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15760 3' -51.6 NC_004065.1 + 147956 1.11 0.008399
Target:  5'- aUCCUACCGAUCGAAGAGCAGAGCAACu -3'
miRNA:   3'- -AGGAUGGCUAGCUUCUCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 229392 0.68 0.988021
Target:  5'- cCCaccCCGGggucCGAAGAGCGGugaAGCGACu -3'
miRNA:   3'- aGGau-GGCUa---GCUUCUCGUC---UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 177206 0.67 0.990723
Target:  5'- cCCUACCGGUCacuuuugccGAGGGCGGGcGCGc- -3'
miRNA:   3'- aGGAUGGCUAGc--------UUCUCGUCU-CGUug -5'
15760 3' -51.6 NC_004065.1 + 113014 0.66 0.997146
Target:  5'- cCCUGCCGAUCGu---GCcGAuCAACg -3'
miRNA:   3'- aGGAUGGCUAGCuucuCGuCUcGUUG- -5'
15760 3' -51.6 NC_004065.1 + 108746 0.71 0.919793
Target:  5'- aUCCUGgCGAUgCGGAcGAGCAaGAGCAc- -3'
miRNA:   3'- -AGGAUgGCUA-GCUU-CUCGU-CUCGUug -5'
15760 3' -51.6 NC_004065.1 + 90717 0.71 0.925355
Target:  5'- cUCCUcGCCGucguuggaGUCGcAGAGCgcucGGAGCAGCg -3'
miRNA:   3'- -AGGA-UGGC--------UAGCuUCUCG----UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 129123 0.71 0.935747
Target:  5'- aCCUGCCGGaCGAucAGCAGugcGCGGCg -3'
miRNA:   3'- aGGAUGGCUaGCUucUCGUCu--CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 106157 0.7 0.957521
Target:  5'- aCCUGCgGcgCGu---GCGGAGCGACa -3'
miRNA:   3'- aGGAUGgCuaGCuucuCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 62285 0.69 0.973614
Target:  5'- cCCUAUCGAccUUGAagAGAGCGGGuCGACa -3'
miRNA:   3'- aGGAUGGCU--AGCU--UCUCGUCUcGUUG- -5'
15760 3' -51.6 NC_004065.1 + 102304 0.68 0.988021
Target:  5'- uUCC-AC---UCGGAGAGCgAGAGCAGCc -3'
miRNA:   3'- -AGGaUGgcuAGCUUCUCG-UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 167978 0.68 0.982873
Target:  5'- aCCUGCCGcuUCGGcaccaccAGCAGcAGCAGCg -3'
miRNA:   3'- aGGAUGGCu-AGCUuc-----UCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 31819 0.69 0.973614
Target:  5'- gCCUGCCGGacgCGGAGuuCAGGGcCGACc -3'
miRNA:   3'- aGGAUGGCUa--GCUUCucGUCUC-GUUG- -5'
15760 3' -51.6 NC_004065.1 + 130846 0.72 0.901656
Target:  5'- -aCUACCG--CGAGGAGguGcAGCAGCa -3'
miRNA:   3'- agGAUGGCuaGCUUCUCguC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 107744 0.68 0.986295
Target:  5'- aUCCUcgGCCGGcggaugccccaggUCGGugucggcgcgGGAGCAGcGGCGACa -3'
miRNA:   3'- -AGGA--UGGCU-------------AGCU----------UCUCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 227499 0.72 0.907942
Target:  5'- gUCUACCGAggCGAAGAGCGGuuUGAUg -3'
miRNA:   3'- aGGAUGGCUa-GCUUCUCGUCucGUUG- -5'
15760 3' -51.6 NC_004065.1 + 7653 0.7 0.961176
Target:  5'- gUUCaACCgGAUCGAAGAGCu--GCGACu -3'
miRNA:   3'- -AGGaUGG-CUAGCUUCUCGucuCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 36620 0.68 0.987871
Target:  5'- cCCcACCGAUgacgaucUGggGcaugaGGCAGGGCGGCa -3'
miRNA:   3'- aGGaUGGCUA-------GCuuC-----UCGUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 223789 0.67 0.9906
Target:  5'- gCUUGCCGuAUCGcuuGAGCAGucuagcuAGCGGCu -3'
miRNA:   3'- aGGAUGGC-UAGCuu-CUCGUC-------UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 180144 0.71 0.919793
Target:  5'- gUCUGgaGGUCGAuucGAGCaAGAGCAGCg -3'
miRNA:   3'- aGGAUggCUAGCUu--CUCG-UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 202199 0.71 0.927511
Target:  5'- ---gGCCGAgcacccgcaggcacaUCGGAGGGCuGGGCGACg -3'
miRNA:   3'- aggaUGGCU---------------AGCUUCUCGuCUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.