miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15760 3' -51.6 NC_004065.1 + 129123 0.71 0.935747
Target:  5'- aCCUGCCGGaCGAucAGCAGugcGCGGCg -3'
miRNA:   3'- aGGAUGGCUaGCUucUCGUCu--CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 31885 0.67 0.992921
Target:  5'- gCCUGCUGGuguacUCG-AGAGCGGGccugacGCGGCg -3'
miRNA:   3'- aGGAUGGCU-----AGCuUCUCGUCU------CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 177206 0.67 0.990723
Target:  5'- cCCUACCGGUCacuuuugccGAGGGCGGGcGCGc- -3'
miRNA:   3'- aGGAUGGCUAGc--------UUCUCGUCU-CGUug -5'
15760 3' -51.6 NC_004065.1 + 202199 0.71 0.927511
Target:  5'- ---gGCCGAgcacccgcaggcacaUCGGAGGGCuGGGCGACg -3'
miRNA:   3'- aggaUGGCU---------------AGCUUCUCGuCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 113014 0.66 0.997146
Target:  5'- cCCUGCCGAUCGu---GCcGAuCAACg -3'
miRNA:   3'- aGGAUGGCUAGCuucuCGuCUcGUUG- -5'
15760 3' -51.6 NC_004065.1 + 90717 0.71 0.925355
Target:  5'- cUCCUcGCCGucguuggaGUCGcAGAGCgcucGGAGCAGCg -3'
miRNA:   3'- -AGGA-UGGC--------UAGCuUCUCG----UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 108746 0.71 0.919793
Target:  5'- aUCCUGgCGAUgCGGAcGAGCAaGAGCAc- -3'
miRNA:   3'- -AGGAUgGCUA-GCUU-CUCGU-CUCGUug -5'
15760 3' -51.6 NC_004065.1 + 71839 0.7 0.953638
Target:  5'- -gCUGCUGGU-GGAGAGCGGAGgGAUc -3'
miRNA:   3'- agGAUGGCUAgCUUCUCGUCUCgUUG- -5'
15760 3' -51.6 NC_004065.1 + 207873 0.66 0.995419
Target:  5'- cCCUcACCGucacGUCGAAGgguAGCGGGGCcgGGCu -3'
miRNA:   3'- aGGA-UGGC----UAGCUUC---UCGUCUCG--UUG- -5'
15760 3' -51.6 NC_004065.1 + 23988 0.66 0.995419
Target:  5'- gUCCU--CGG-CGAuGAGaCAGAGCGACg -3'
miRNA:   3'- -AGGAugGCUaGCUuCUC-GUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 120207 0.68 0.984746
Target:  5'- cCCUGCCGAUCuucuuGGGCGGAccGCGc- -3'
miRNA:   3'- aGGAUGGCUAGcuu--CUCGUCU--CGUug -5'
15760 3' -51.6 NC_004065.1 + 29689 0.68 0.984566
Target:  5'- gUCCUcguucuugucaucGCCGGUCGAGcGGCGGAcGCcGCc -3'
miRNA:   3'- -AGGA-------------UGGCUAGCUUcUCGUCU-CGuUG- -5'
15760 3' -51.6 NC_004065.1 + 97940 0.68 0.980617
Target:  5'- uUCCU-CCGGcggcagcgcgUCGAAGuGCuugcggaAGAGCAGCa -3'
miRNA:   3'- -AGGAuGGCU----------AGCUUCuCG-------UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 65207 0.68 0.978842
Target:  5'- gUUCUACCGccucggguugacccCGAAGAGCAcGGCGACc -3'
miRNA:   3'- -AGGAUGGCua------------GCUUCUCGUcUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 114969 0.7 0.949522
Target:  5'- cUCCagaACCGAugaguUCGGAGAGguGAggGCGACu -3'
miRNA:   3'- -AGGa--UGGCU-----AGCUUCUCguCU--CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 177032 0.67 0.993306
Target:  5'- cUCCUcCgGAUCGAGGAcaccguagacacacaGCAGAGUgucaGACu -3'
miRNA:   3'- -AGGAuGgCUAGCUUCU---------------CGUCUCG----UUG- -5'
15760 3' -51.6 NC_004065.1 + 39592 0.67 0.993852
Target:  5'- aUCCgGCaGAUCGggGGGgAGAGuCAAa -3'
miRNA:   3'- -AGGaUGgCUAGCuuCUCgUCUC-GUUg -5'
15760 3' -51.6 NC_004065.1 + 74101 0.66 0.994524
Target:  5'- --gUGCCGAaacagguccuaGAGGAGCAGGGCAc- -3'
miRNA:   3'- aggAUGGCUag---------CUUCUCGUCUCGUug -5'
15760 3' -51.6 NC_004065.1 + 144235 0.66 0.994603
Target:  5'- aCCUcaccguacggaugACCGAgaacgccaCGcAGAGCAGuAGCAGCa -3'
miRNA:   3'- aGGA-------------UGGCUa-------GCuUCUCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 114902 0.66 0.994682
Target:  5'- cCCUACC---CGGAGAGCGGGGauaucccaAGCg -3'
miRNA:   3'- aGGAUGGcuaGCUUCUCGUCUCg-------UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.