miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15760 3' -51.6 NC_004065.1 + 80673 0.69 0.973614
Target:  5'- cCCUGCCGAUCuuGGuGaUAGaAGCGGCg -3'
miRNA:   3'- aGGAUGGCUAGcuUCuC-GUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 77634 0.69 0.973614
Target:  5'- aCCUGgCGAUCaaGAAGAGCAaGGCGc- -3'
miRNA:   3'- aGGAUgGCUAG--CUUCUCGUcUCGUug -5'
15760 3' -51.6 NC_004065.1 + 64872 0.69 0.96782
Target:  5'- aUCCUGCgGAccgcggcgcgcgUCGGAGA--AGAGCGGCg -3'
miRNA:   3'- -AGGAUGgCU------------AGCUUCUcgUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 71839 0.7 0.953638
Target:  5'- -gCUGCUGGU-GGAGAGCGGAGgGAUc -3'
miRNA:   3'- agGAUGGCUAgCUUCUCGUCUCgUUG- -5'
15760 3' -51.6 NC_004065.1 + 114969 0.7 0.949522
Target:  5'- cUCCagaACCGAugaguUCGGAGAGguGAggGCGACu -3'
miRNA:   3'- -AGGa--UGGCU-----AGCUUCUCguCU--CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 25931 0.7 0.949522
Target:  5'- uUCCcGCCGG-CGAAGAGgAGAGUuuCu -3'
miRNA:   3'- -AGGaUGGCUaGCUUCUCgUCUCGuuG- -5'
15760 3' -51.6 NC_004065.1 + 67643 0.67 0.9906
Target:  5'- cCCggacAUCGAcgcgucggugaugUCGggGAGCGGcGGCGGCg -3'
miRNA:   3'- aGGa---UGGCU-------------AGCuuCUCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 45301 0.67 0.990723
Target:  5'- cUCCU-CCGAUCGAc-AGCAucGGCAGCc -3'
miRNA:   3'- -AGGAuGGCUAGCUucUCGUc-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 18563 0.66 0.99607
Target:  5'- aCCUcuCCGGcgacuccucCGAGGAGCGGAGgGGCc -3'
miRNA:   3'- aGGAu-GGCUa--------GCUUCUCGUCUCgUUG- -5'
15760 3' -51.6 NC_004065.1 + 133358 0.66 0.995883
Target:  5'- uUCUUGCCGGUgacgcgaaaccaguUGAAGAGUAcGGGCGcgaACg -3'
miRNA:   3'- -AGGAUGGCUA--------------GCUUCUCGU-CUCGU---UG- -5'
15760 3' -51.6 NC_004065.1 + 207873 0.66 0.995419
Target:  5'- cCCUcACCGucacGUCGAAGgguAGCGGGGCcgGGCu -3'
miRNA:   3'- aGGA-UGGC----UAGCUUC---UCGUCUCG--UUG- -5'
15760 3' -51.6 NC_004065.1 + 23988 0.66 0.995419
Target:  5'- gUCCU--CGG-CGAuGAGaCAGAGCGACg -3'
miRNA:   3'- -AGGAugGCUaGCUuCUC-GUCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 114902 0.66 0.994682
Target:  5'- cCCUACC---CGGAGAGCGGGGauaucccaAGCg -3'
miRNA:   3'- aGGAUGGcuaGCUUCUCGUCUCg-------UUG- -5'
15760 3' -51.6 NC_004065.1 + 144235 0.66 0.994603
Target:  5'- aCCUcaccguacggaugACCGAgaacgccaCGcAGAGCAGuAGCAGCa -3'
miRNA:   3'- aGGA-------------UGGCUa-------GCuUCUCGUC-UCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 74101 0.66 0.994524
Target:  5'- --gUGCCGAaacagguccuaGAGGAGCAGGGCAc- -3'
miRNA:   3'- aggAUGGCUag---------CUUCUCGUCUCGUug -5'
15760 3' -51.6 NC_004065.1 + 39592 0.67 0.993852
Target:  5'- aUCCgGCaGAUCGggGGGgAGAGuCAAa -3'
miRNA:   3'- -AGGaUGgCUAGCuuCUCgUCUC-GUUg -5'
15760 3' -51.6 NC_004065.1 + 1468 0.67 0.992921
Target:  5'- uUUCUGC--GUCGAcAGAGCAGAagGCAACc -3'
miRNA:   3'- -AGGAUGgcUAGCU-UCUCGUCU--CGUUG- -5'
15760 3' -51.6 NC_004065.1 + 82381 0.67 0.992921
Target:  5'- ---cGCUGAagGggGAGCAGGGCu-- -3'
miRNA:   3'- aggaUGGCUagCuuCUCGUCUCGuug -5'
15760 3' -51.6 NC_004065.1 + 66081 0.67 0.99231
Target:  5'- aCCUGgCGAUCGAGucGUuccugcacgcgcuggGGGGCGACa -3'
miRNA:   3'- aGGAUgGCUAGCUUcuCG---------------UCUCGUUG- -5'
15760 3' -51.6 NC_004065.1 + 149029 0.67 0.990723
Target:  5'- aCCUcggGCUGAccUCG-GGAGCGG-GCGACg -3'
miRNA:   3'- aGGA---UGGCU--AGCuUCUCGUCuCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.