Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15760 | 3' | -51.6 | NC_004065.1 | + | 66081 | 0.67 | 0.99231 |
Target: 5'- aCCUGgCGAUCGAGucGUuccugcacgcgcuggGGGGCGACa -3' miRNA: 3'- aGGAUgGCUAGCUUcuCG---------------UCUCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 149029 | 0.67 | 0.990723 |
Target: 5'- aCCUcggGCUGAccUCG-GGAGCGG-GCGACg -3' miRNA: 3'- aGGA---UGGCU--AGCuUCUCGUCuCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 45301 | 0.67 | 0.990723 |
Target: 5'- cUCCU-CCGAUCGAc-AGCAucGGCAGCc -3' miRNA: 3'- -AGGAuGGCUAGCUucUCGUc-UCGUUG- -5' |
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15760 | 3' | -51.6 | NC_004065.1 | + | 56595 | 0.75 | 0.762797 |
Target: 5'- cUUCUGCCGucGUCGAGcGAGCAG-GCGGCc -3' miRNA: 3'- -AGGAUGGC--UAGCUU-CUCGUCuCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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