Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15761 | 3' | -58.5 | NC_004065.1 | + | 147709 | 1.08 | 0.002684 |
Target: 5'- cGGCCUCGGGCACAUCCCCAACCUGUAc -3' miRNA: 3'- -CCGGAGCCCGUGUAGGGGUUGGACAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 70358 | 0.75 | 0.38581 |
Target: 5'- cGCCUCGGGUAUgcuauauGUCCCCcuuuuuguACCUGUGu -3' miRNA: 3'- cCGGAGCCCGUG-------UAGGGGu-------UGGACAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 107804 | 0.74 | 0.472241 |
Target: 5'- uGGCCgUGGGCgaGCGggCCaCCAGCCUGUAg -3' miRNA: 3'- -CCGGaGCCCG--UGUa-GG-GGUUGGACAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 110021 | 0.74 | 0.472241 |
Target: 5'- cGCCUCaGcGGCGuCGUCCCCAACCUc-- -3' miRNA: 3'- cCGGAG-C-CCGU-GUAGGGGUUGGAcau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 139486 | 0.7 | 0.645035 |
Target: 5'- gGGCCgUCGGGCGgGacgagaaguacUCCCCGcaccACCUGg- -3' miRNA: 3'- -CCGG-AGCCCGUgU-----------AGGGGU----UGGACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 178205 | 0.7 | 0.65489 |
Target: 5'- aGGUUg-GGGCGCAUCCCCAugCgGg- -3' miRNA: 3'- -CCGGagCCCGUGUAGGGGUugGaCau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 59400 | 0.69 | 0.713394 |
Target: 5'- cGGCCUCuGGuCACGUCCCUGACg---- -3' miRNA: 3'- -CCGGAGcCC-GUGUAGGGGUUGgacau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 161511 | 0.69 | 0.732466 |
Target: 5'- cGGCCUcCGGGagauGCGUCCgCCGccucACCUGa- -3' miRNA: 3'- -CCGGA-GCCCg---UGUAGG-GGU----UGGACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 139965 | 0.69 | 0.741886 |
Target: 5'- -aUCUCGGGCAgGUCCUgGACUacUGUAa -3' miRNA: 3'- ccGGAGCCCGUgUAGGGgUUGG--ACAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 198218 | 0.68 | 0.769576 |
Target: 5'- cGCgUCcGGCAgGccCCCCGGCCUGUAg -3' miRNA: 3'- cCGgAGcCCGUgUa-GGGGUUGGACAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 64640 | 0.68 | 0.778589 |
Target: 5'- aGGCCaUCGaccGCGCGUCCgCCGugCUGg- -3' miRNA: 3'- -CCGG-AGCc--CGUGUAGG-GGUugGACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 125438 | 0.68 | 0.78748 |
Target: 5'- cGCCUCGGGCAgGUUaCCC-ACCaUGa- -3' miRNA: 3'- cCGGAGCCCGUgUAG-GGGuUGG-ACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 1325 | 0.68 | 0.796242 |
Target: 5'- uGGacgaUCGaguGGUACAUCCCCAGCCUa-- -3' miRNA: 3'- -CCgg--AGC---CCGUGUAGGGGUUGGAcau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 75677 | 0.68 | 0.804865 |
Target: 5'- cGGCCgCGGGCugAUUCUUGGCCg--- -3' miRNA: 3'- -CCGGaGCCCGugUAGGGGUUGGacau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 155889 | 0.68 | 0.804866 |
Target: 5'- cGGCC-CGGGCACccgccucgacGUCCUCGugcCCUGc- -3' miRNA: 3'- -CCGGaGCCCGUG----------UAGGGGUu--GGACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 65214 | 0.67 | 0.829835 |
Target: 5'- cGCCUCGGGUugA-CCCCGaagagcacggcgACCUa-- -3' miRNA: 3'- cCGGAGCCCGugUaGGGGU------------UGGAcau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 1768 | 0.67 | 0.836247 |
Target: 5'- gGGCCUCacccgcuGGGUgucGCAuucuaccUCCCUGACCUGg- -3' miRNA: 3'- -CCGGAG-------CCCG---UGU-------AGGGGUUGGACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 83215 | 0.67 | 0.837833 |
Target: 5'- gGGCC-CGGGCaggcACAUCCgCAggacggcgaACCUGa- -3' miRNA: 3'- -CCGGaGCCCG----UGUAGGgGU---------UGGACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 31907 | 0.67 | 0.845657 |
Target: 5'- gGGCCUgaCGcGGCGCGUCgCCGACagcGUGc -3' miRNA: 3'- -CCGGA--GC-CCGUGUAGgGGUUGga-CAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 46287 | 0.67 | 0.845657 |
Target: 5'- aGGCCgUGGGCGa--CCUgGACCUGUc -3' miRNA: 3'- -CCGGaGCCCGUguaGGGgUUGGACAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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