miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15761 3' -58.5 NC_004065.1 + 147709 1.08 0.002684
Target:  5'- cGGCCUCGGGCACAUCCCCAACCUGUAc -3'
miRNA:   3'- -CCGGAGCCCGUGUAGGGGUUGGACAU- -5'
15761 3' -58.5 NC_004065.1 + 150265 0.66 0.872995
Target:  5'- -cCCUCGuGGUgccccagaggaucuACAUCCCCGACCaGUu -3'
miRNA:   3'- ccGGAGC-CCG--------------UGUAGGGGUUGGaCAu -5'
15761 3' -58.5 NC_004065.1 + 155889 0.68 0.804866
Target:  5'- cGGCC-CGGGCACccgccucgacGUCCUCGugcCCUGc- -3'
miRNA:   3'- -CCGGaGCCCGUG----------UAGGGGUu--GGACau -5'
15761 3' -58.5 NC_004065.1 + 161511 0.69 0.732466
Target:  5'- cGGCCUcCGGGagauGCGUCCgCCGccucACCUGa- -3'
miRNA:   3'- -CCGGA-GCCCg---UGUAGG-GGU----UGGACau -5'
15761 3' -58.5 NC_004065.1 + 169773 0.66 0.875095
Target:  5'- cGCCUCGGGCAgaaGUUCgCCGACaUGg- -3'
miRNA:   3'- cCGGAGCCCGUg--UAGG-GGUUGgACau -5'
15761 3' -58.5 NC_004065.1 + 169847 0.67 0.853301
Target:  5'- cGCCgugCGGGC-CAgCgUCGACCUGUGc -3'
miRNA:   3'- cCGGa--GCCCGuGUaGgGGUUGGACAU- -5'
15761 3' -58.5 NC_004065.1 + 169872 0.66 0.875095
Target:  5'- nGCauggCGGGCGCcgauccguUCCCCAaguucccuaagaGCCUGUAc -3'
miRNA:   3'- cCGga--GCCCGUGu-------AGGGGU------------UGGACAU- -5'
15761 3' -58.5 NC_004065.1 + 178205 0.7 0.65489
Target:  5'- aGGUUg-GGGCGCAUCCCCAugCgGg- -3'
miRNA:   3'- -CCGGagCCCGUGUAGGGGUugGaCau -5'
15761 3' -58.5 NC_004065.1 + 198218 0.68 0.769576
Target:  5'- cGCgUCcGGCAgGccCCCCGGCCUGUAg -3'
miRNA:   3'- cCGgAGcCCGUgUa-GGGGUUGGACAU- -5'
15761 3' -58.5 NC_004065.1 + 199545 0.66 0.875094
Target:  5'- cGCCUccagcCGGGCGCG-CCCCAucguGCCgcgGUc -3'
miRNA:   3'- cCGGA-----GCCCGUGUaGGGGU----UGGa--CAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.