miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15761 3' -58.5 NC_004065.1 + 70358 0.75 0.38581
Target:  5'- cGCCUCGGGUAUgcuauauGUCCCCcuuuuuguACCUGUGu -3'
miRNA:   3'- cCGGAGCCCGUG-------UAGGGGu-------UGGACAU- -5'
15761 3' -58.5 NC_004065.1 + 65214 0.67 0.829835
Target:  5'- cGCCUCGGGUugA-CCCCGaagagcacggcgACCUa-- -3'
miRNA:   3'- cCGGAGCCCGugUaGGGGU------------UGGAcau -5'
15761 3' -58.5 NC_004065.1 + 64640 0.68 0.778589
Target:  5'- aGGCCaUCGaccGCGCGUCCgCCGugCUGg- -3'
miRNA:   3'- -CCGG-AGCc--CGUGUAGG-GGUugGACau -5'
15761 3' -58.5 NC_004065.1 + 59400 0.69 0.713394
Target:  5'- cGGCCUCuGGuCACGUCCCUGACg---- -3'
miRNA:   3'- -CCGGAGcCC-GUGUAGGGGUUGgacau -5'
15761 3' -58.5 NC_004065.1 + 46287 0.67 0.845657
Target:  5'- aGGCCgUGGGCGa--CCUgGACCUGUc -3'
miRNA:   3'- -CCGGaGCCCGUguaGGGgUUGGACAu -5'
15761 3' -58.5 NC_004065.1 + 43330 0.66 0.879923
Target:  5'- uGGCCcggCGGGgacgccccacgcgcCGCGUCCCCGACaCUcGUc -3'
miRNA:   3'- -CCGGa--GCCC--------------GUGUAGGGGUUG-GA-CAu -5'
15761 3' -58.5 NC_004065.1 + 31907 0.67 0.845657
Target:  5'- gGGCCUgaCGcGGCGCGUCgCCGACagcGUGc -3'
miRNA:   3'- -CCGGA--GC-CCGUGUAGgGGUUGga-CAU- -5'
15761 3' -58.5 NC_004065.1 + 4988 0.66 0.868026
Target:  5'- uGCCUCGGGCuucaACGUCUCCuaucgcAACCa--- -3'
miRNA:   3'- cCGGAGCCCG----UGUAGGGG------UUGGacau -5'
15761 3' -58.5 NC_004065.1 + 1768 0.67 0.836247
Target:  5'- gGGCCUCacccgcuGGGUgucGCAuucuaccUCCCUGACCUGg- -3'
miRNA:   3'- -CCGGAG-------CCCG---UGU-------AGGGGUUGGACau -5'
15761 3' -58.5 NC_004065.1 + 1325 0.68 0.796242
Target:  5'- uGGacgaUCGaguGGUACAUCCCCAGCCUa-- -3'
miRNA:   3'- -CCgg--AGC---CCGUGUAGGGGUUGGAcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.