miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15761 3' -58.5 NC_004065.1 + 107804 0.74 0.472241
Target:  5'- uGGCCgUGGGCgaGCGggCCaCCAGCCUGUAg -3'
miRNA:   3'- -CCGGaGCCCG--UGUa-GG-GGUUGGACAU- -5'
15761 3' -58.5 NC_004065.1 + 43330 0.66 0.879923
Target:  5'- uGGCCcggCGGGgacgccccacgcgcCGCGUCCCCGACaCUcGUc -3'
miRNA:   3'- -CCGGa--GCCC--------------GUGUAGGGGUUG-GA-CAu -5'
15761 3' -58.5 NC_004065.1 + 199545 0.66 0.875094
Target:  5'- cGCCUccagcCGGGCGCG-CCCCAucguGCCgcgGUc -3'
miRNA:   3'- cCGGA-----GCCCGUGUaGGGGU----UGGa--CAu -5'
15761 3' -58.5 NC_004065.1 + 130877 0.66 0.860759
Target:  5'- aGCCUCGGGCGCcggcgugagGUCCUCAugagGUGu -3'
miRNA:   3'- cCGGAGCCCGUG---------UAGGGGUuggaCAU- -5'
15761 3' -58.5 NC_004065.1 + 136805 0.67 0.853301
Target:  5'- cGCUUCGucGGCuGCGUCCCCGACa-GUGg -3'
miRNA:   3'- cCGGAGC--CCG-UGUAGGGGUUGgaCAU- -5'
15761 3' -58.5 NC_004065.1 + 46287 0.67 0.845657
Target:  5'- aGGCCgUGGGCGa--CCUgGACCUGUc -3'
miRNA:   3'- -CCGGaGCCCGUguaGGGgUUGGACAu -5'
15761 3' -58.5 NC_004065.1 + 65214 0.67 0.829835
Target:  5'- cGCCUCGGGUugA-CCCCGaagagcacggcgACCUa-- -3'
miRNA:   3'- cCGGAGCCCGugUaGGGGU------------UGGAcau -5'
15761 3' -58.5 NC_004065.1 + 75677 0.68 0.804865
Target:  5'- cGGCCgCGGGCugAUUCUUGGCCg--- -3'
miRNA:   3'- -CCGGaGCCCGugUAGGGGUUGGacau -5'
15761 3' -58.5 NC_004065.1 + 1325 0.68 0.796242
Target:  5'- uGGacgaUCGaguGGUACAUCCCCAGCCUa-- -3'
miRNA:   3'- -CCgg--AGC---CCGUGUAGGGGUUGGAcau -5'
15761 3' -58.5 NC_004065.1 + 110021 0.74 0.472241
Target:  5'- cGCCUCaGcGGCGuCGUCCCCAACCUc-- -3'
miRNA:   3'- cCGGAG-C-CCGU-GUAGGGGUUGGAcau -5'
15761 3' -58.5 NC_004065.1 + 178205 0.7 0.65489
Target:  5'- aGGUUg-GGGCGCAUCCCCAugCgGg- -3'
miRNA:   3'- -CCGGagCCCGUGUAGGGGUugGaCau -5'
15761 3' -58.5 NC_004065.1 + 161511 0.69 0.732466
Target:  5'- cGGCCUcCGGGagauGCGUCCgCCGccucACCUGa- -3'
miRNA:   3'- -CCGGA-GCCCg---UGUAGG-GGU----UGGACau -5'
15761 3' -58.5 NC_004065.1 + 198218 0.68 0.769576
Target:  5'- cGCgUCcGGCAgGccCCCCGGCCUGUAg -3'
miRNA:   3'- cCGgAGcCCGUgUa-GGGGUUGGACAU- -5'
15761 3' -58.5 NC_004065.1 + 64640 0.68 0.778589
Target:  5'- aGGCCaUCGaccGCGCGUCCgCCGugCUGg- -3'
miRNA:   3'- -CCGG-AGCc--CGUGUAGG-GGUugGACau -5'
15761 3' -58.5 NC_004065.1 + 125438 0.68 0.78748
Target:  5'- cGCCUCGGGCAgGUUaCCC-ACCaUGa- -3'
miRNA:   3'- cCGGAGCCCGUgUAG-GGGuUGG-ACau -5'
15761 3' -58.5 NC_004065.1 + 169872 0.66 0.875095
Target:  5'- nGCauggCGGGCGCcgauccguUCCCCAaguucccuaagaGCCUGUAc -3'
miRNA:   3'- cCGga--GCCCGUGu-------AGGGGU------------UGGACAU- -5'
15761 3' -58.5 NC_004065.1 + 70358 0.75 0.38581
Target:  5'- cGCCUCGGGUAUgcuauauGUCCCCcuuuuuguACCUGUGu -3'
miRNA:   3'- cCGGAGCCCGUG-------UAGGGGu-------UGGACAU- -5'
15761 3' -58.5 NC_004065.1 + 139486 0.7 0.645035
Target:  5'- gGGCCgUCGGGCGgGacgagaaguacUCCCCGcaccACCUGg- -3'
miRNA:   3'- -CCGG-AGCCCGUgU-----------AGGGGU----UGGACau -5'
15761 3' -58.5 NC_004065.1 + 59400 0.69 0.713394
Target:  5'- cGGCCUCuGGuCACGUCCCUGACg---- -3'
miRNA:   3'- -CCGGAGcCC-GUGUAGGGGUUGgacau -5'
15761 3' -58.5 NC_004065.1 + 139965 0.69 0.741886
Target:  5'- -aUCUCGGGCAgGUCCUgGACUacUGUAa -3'
miRNA:   3'- ccGGAGCCCGUgUAGGGgUUGG--ACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.