miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15761 3' -58.5 NC_004065.1 + 169773 0.66 0.875095
Target:  5'- cGCCUCGGGCAgaaGUUCgCCGACaUGg- -3'
miRNA:   3'- cCGGAGCCCGUg--UAGG-GGUUGgACau -5'
15761 3' -58.5 NC_004065.1 + 83215 0.67 0.837833
Target:  5'- gGGCC-CGGGCaggcACAUCCgCAggacggcgaACCUGa- -3'
miRNA:   3'- -CCGGaGCCCG----UGUAGGgGU---------UGGACau -5'
15761 3' -58.5 NC_004065.1 + 1768 0.67 0.836247
Target:  5'- gGGCCUCacccgcuGGGUgucGCAuucuaccUCCCUGACCUGg- -3'
miRNA:   3'- -CCGGAG-------CCCG---UGU-------AGGGGUUGGACau -5'
15761 3' -58.5 NC_004065.1 + 155889 0.68 0.804866
Target:  5'- cGGCC-CGGGCACccgccucgacGUCCUCGugcCCUGc- -3'
miRNA:   3'- -CCGGaGCCCGUG----------UAGGGGUu--GGACau -5'
15761 3' -58.5 NC_004065.1 + 139965 0.69 0.741886
Target:  5'- -aUCUCGGGCAgGUCCUgGACUacUGUAa -3'
miRNA:   3'- ccGGAGCCCGUgUAGGGgUUGG--ACAU- -5'
15761 3' -58.5 NC_004065.1 + 59400 0.69 0.713394
Target:  5'- cGGCCUCuGGuCACGUCCCUGACg---- -3'
miRNA:   3'- -CCGGAGcCC-GUGUAGGGGUUGgacau -5'
15761 3' -58.5 NC_004065.1 + 139486 0.7 0.645035
Target:  5'- gGGCCgUCGGGCGgGacgagaaguacUCCCCGcaccACCUGg- -3'
miRNA:   3'- -CCGG-AGCCCGUgU-----------AGGGGU----UGGACau -5'
15761 3' -58.5 NC_004065.1 + 70358 0.75 0.38581
Target:  5'- cGCCUCGGGUAUgcuauauGUCCCCcuuuuuguACCUGUGu -3'
miRNA:   3'- cCGGAGCCCGUG-------UAGGGGu-------UGGACAU- -5'
15761 3' -58.5 NC_004065.1 + 147709 1.08 0.002684
Target:  5'- cGGCCUCGGGCACAUCCCCAACCUGUAc -3'
miRNA:   3'- -CCGGAGCCCGUGUAGGGGUUGGACAU- -5'
15761 3' -58.5 NC_004065.1 + 169872 0.66 0.875095
Target:  5'- nGCauggCGGGCGCcgauccguUCCCCAaguucccuaagaGCCUGUAc -3'
miRNA:   3'- cCGga--GCCCGUGu-------AGGGGU------------UGGACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.