Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15761 | 3' | -58.5 | NC_004065.1 | + | 1768 | 0.67 | 0.836247 |
Target: 5'- gGGCCUCacccgcuGGGUgucGCAuucuaccUCCCUGACCUGg- -3' miRNA: 3'- -CCGGAG-------CCCG---UGU-------AGGGGUUGGACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 139965 | 0.69 | 0.741886 |
Target: 5'- -aUCUCGGGCAgGUCCUgGACUacUGUAa -3' miRNA: 3'- ccGGAGCCCGUgUAGGGgUUGG--ACAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 59400 | 0.69 | 0.713394 |
Target: 5'- cGGCCUCuGGuCACGUCCCUGACg---- -3' miRNA: 3'- -CCGGAGcCC-GUGUAGGGGUUGgacau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 139486 | 0.7 | 0.645035 |
Target: 5'- gGGCCgUCGGGCGgGacgagaaguacUCCCCGcaccACCUGg- -3' miRNA: 3'- -CCGG-AGCCCGUgU-----------AGGGGU----UGGACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 70358 | 0.75 | 0.38581 |
Target: 5'- cGCCUCGGGUAUgcuauauGUCCCCcuuuuuguACCUGUGu -3' miRNA: 3'- cCGGAGCCCGUG-------UAGGGGu-------UGGACAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 147709 | 1.08 | 0.002684 |
Target: 5'- cGGCCUCGGGCACAUCCCCAACCUGUAc -3' miRNA: 3'- -CCGGAGCCCGUGUAGGGGUUGGACAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 169773 | 0.66 | 0.875095 |
Target: 5'- cGCCUCGGGCAgaaGUUCgCCGACaUGg- -3' miRNA: 3'- cCGGAGCCCGUg--UAGG-GGUUGgACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 150265 | 0.66 | 0.872995 |
Target: 5'- -cCCUCGuGGUgccccagaggaucuACAUCCCCGACCaGUu -3' miRNA: 3'- ccGGAGC-CCG--------------UGUAGGGGUUGGaCAu -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 4988 | 0.66 | 0.868026 |
Target: 5'- uGCCUCGGGCuucaACGUCUCCuaucgcAACCa--- -3' miRNA: 3'- cCGGAGCCCG----UGUAGGGG------UUGGacau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 169847 | 0.67 | 0.853301 |
Target: 5'- cGCCgugCGGGC-CAgCgUCGACCUGUGc -3' miRNA: 3'- cCGGa--GCCCGuGUaGgGGUUGGACAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 83215 | 0.67 | 0.837833 |
Target: 5'- gGGCC-CGGGCaggcACAUCCgCAggacggcgaACCUGa- -3' miRNA: 3'- -CCGGaGCCCG----UGUAGGgGU---------UGGACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 169872 | 0.66 | 0.875095 |
Target: 5'- nGCauggCGGGCGCcgauccguUCCCCAaguucccuaagaGCCUGUAc -3' miRNA: 3'- cCGga--GCCCGUGu-------AGGGGU------------UGGACAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 31907 | 0.67 | 0.845657 |
Target: 5'- gGGCCUgaCGcGGCGCGUCgCCGACagcGUGc -3' miRNA: 3'- -CCGGA--GC-CCGUGUAGgGGUUGga-CAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 91714 | 0.66 | 0.868026 |
Target: 5'- aGGCCUCgcacgcgaucaGGGcCGCGUCCacggCCucCCUGUAc -3' miRNA: 3'- -CCGGAG-----------CCC-GUGUAGG----GGuuGGACAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 155889 | 0.68 | 0.804866 |
Target: 5'- cGGCC-CGGGCACccgccucgacGUCCUCGugcCCUGc- -3' miRNA: 3'- -CCGGaGCCCGUG----------UAGGGGUu--GGACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 43330 | 0.66 | 0.879923 |
Target: 5'- uGGCCcggCGGGgacgccccacgcgcCGCGUCCCCGACaCUcGUc -3' miRNA: 3'- -CCGGa--GCCC--------------GUGUAGGGGUUG-GA-CAu -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 199545 | 0.66 | 0.875094 |
Target: 5'- cGCCUccagcCGGGCGCG-CCCCAucguGCCgcgGUc -3' miRNA: 3'- cCGGA-----GCCCGUGUaGGGGU----UGGa--CAu -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 130877 | 0.66 | 0.860759 |
Target: 5'- aGCCUCGGGCGCcggcgugagGUCCUCAugagGUGu -3' miRNA: 3'- cCGGAGCCCGUG---------UAGGGGUuggaCAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 136805 | 0.67 | 0.853301 |
Target: 5'- cGCUUCGucGGCuGCGUCCCCGACa-GUGg -3' miRNA: 3'- cCGGAGC--CCG-UGUAGGGGUUGgaCAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 125438 | 0.68 | 0.78748 |
Target: 5'- cGCCUCGGGCAgGUUaCCC-ACCaUGa- -3' miRNA: 3'- cCGGAGCCCGUgUAG-GGGuUGG-ACau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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