Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15761 | 3' | -58.5 | NC_004065.1 | + | 64640 | 0.68 | 0.778589 |
Target: 5'- aGGCCaUCGaccGCGCGUCCgCCGugCUGg- -3' miRNA: 3'- -CCGG-AGCc--CGUGUAGG-GGUugGACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 125438 | 0.68 | 0.78748 |
Target: 5'- cGCCUCGGGCAgGUUaCCC-ACCaUGa- -3' miRNA: 3'- cCGGAGCCCGUgUAG-GGGuUGG-ACau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 1325 | 0.68 | 0.796242 |
Target: 5'- uGGacgaUCGaguGGUACAUCCCCAGCCUa-- -3' miRNA: 3'- -CCgg--AGC---CCGUGUAGGGGUUGGAcau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 75677 | 0.68 | 0.804865 |
Target: 5'- cGGCCgCGGGCugAUUCUUGGCCg--- -3' miRNA: 3'- -CCGGaGCCCGugUAGGGGUUGGacau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 65214 | 0.67 | 0.829835 |
Target: 5'- cGCCUCGGGUugA-CCCCGaagagcacggcgACCUa-- -3' miRNA: 3'- cCGGAGCCCGugUaGGGGU------------UGGAcau -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 46287 | 0.67 | 0.845657 |
Target: 5'- aGGCCgUGGGCGa--CCUgGACCUGUc -3' miRNA: 3'- -CCGGaGCCCGUguaGGGgUUGGACAu -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 136805 | 0.67 | 0.853301 |
Target: 5'- cGCUUCGucGGCuGCGUCCCCGACa-GUGg -3' miRNA: 3'- cCGGAGC--CCG-UGUAGGGGUUGgaCAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 130877 | 0.66 | 0.860759 |
Target: 5'- aGCCUCGGGCGCcggcgugagGUCCUCAugagGUGu -3' miRNA: 3'- cCGGAGCCCGUG---------UAGGGGUuggaCAU- -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 199545 | 0.66 | 0.875094 |
Target: 5'- cGCCUccagcCGGGCGCG-CCCCAucguGCCgcgGUc -3' miRNA: 3'- cCGGA-----GCCCGUGUaGGGGU----UGGa--CAu -5' |
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15761 | 3' | -58.5 | NC_004065.1 | + | 107804 | 0.74 | 0.472241 |
Target: 5'- uGGCCgUGGGCgaGCGggCCaCCAGCCUGUAg -3' miRNA: 3'- -CCGGaGCCCG--UGUa-GG-GGUUGGACAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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