miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15761 5' -50.4 NC_004065.1 + 82543 0.66 0.997703
Target:  5'- -cCAGgGGCUGGAcggccacCAUGcgGCCGCAGa -3'
miRNA:   3'- aaGUUgUUGACCUu------GUACa-CGGCGUU- -5'
15761 5' -50.4 NC_004065.1 + 131978 0.66 0.997266
Target:  5'- -gCAGCAugUGGGACAcgcaGU-CCGCGAu -3'
miRNA:   3'- aaGUUGUugACCUUGUa---CAcGGCGUU- -5'
15761 5' -50.4 NC_004065.1 + 70175 0.66 0.997219
Target:  5'- cUCGACGuugcuggGCUGGcAGCAgaagGUGCUGCu- -3'
miRNA:   3'- aAGUUGU-------UGACC-UUGUa---CACGGCGuu -5'
15761 5' -50.4 NC_004065.1 + 168619 0.66 0.996762
Target:  5'- -gCGGCuGCUGGcGCugGUGCCGCGGg -3'
miRNA:   3'- aaGUUGuUGACCuUGuaCACGGCGUU- -5'
15761 5' -50.4 NC_004065.1 + 186547 0.66 0.996184
Target:  5'- aUCGGCGGCgccGaGGACAcGUGCUGCGg -3'
miRNA:   3'- aAGUUGUUGa--C-CUUGUaCACGGCGUu -5'
15761 5' -50.4 NC_004065.1 + 133982 0.67 0.994774
Target:  5'- aUCGGCGGCcGGGGCccGUGCCcacGCAc -3'
miRNA:   3'- aAGUUGUUGaCCUUGuaCACGG---CGUu -5'
15761 5' -50.4 NC_004065.1 + 119604 0.67 0.993926
Target:  5'- uUUCcGCGGCUGGGAguucUGUGCCGgGAc -3'
miRNA:   3'- -AAGuUGUUGACCUUgu--ACACGGCgUU- -5'
15761 5' -50.4 NC_004065.1 + 202069 0.68 0.989364
Target:  5'- -gCGAgGuACaGGGACGUGUGCUGCAc -3'
miRNA:   3'- aaGUUgU-UGaCCUUGUACACGGCGUu -5'
15761 5' -50.4 NC_004065.1 + 81994 0.68 0.986252
Target:  5'- uUUCGGCGGCggGGAaggcGCccGUGCCGCu- -3'
miRNA:   3'- -AAGUUGUUGa-CCU----UGuaCACGGCGuu -5'
15761 5' -50.4 NC_004065.1 + 112801 0.69 0.977992
Target:  5'- -gCAGCAGCcGGAACAgacgGUGcCCGUAc -3'
miRNA:   3'- aaGUUGUUGaCCUUGUa---CAC-GGCGUu -5'
15761 5' -50.4 NC_004065.1 + 191345 0.69 0.975449
Target:  5'- cUCGACAugUGGAAUuUG-GCCGaCAGg -3'
miRNA:   3'- aAGUUGUugACCUUGuACaCGGC-GUU- -5'
15761 5' -50.4 NC_004065.1 + 58058 0.69 0.975449
Target:  5'- aUCuGCAugUGGAcguGCGUGcGCUGCAAu -3'
miRNA:   3'- aAGuUGUugACCU---UGUACaCGGCGUU- -5'
15761 5' -50.4 NC_004065.1 + 54122 0.69 0.972698
Target:  5'- gUUCAGCAGCggggaccaaUGGAACAgGUGCCaCAAc -3'
miRNA:   3'- -AAGUUGUUG---------ACCUUGUaCACGGcGUU- -5'
15761 5' -50.4 NC_004065.1 + 141639 0.69 0.972698
Target:  5'- cUCGGCGACgGaGGGCGguggcgGUGCCGCGg -3'
miRNA:   3'- aAGUUGUUGaC-CUUGUa-----CACGGCGUu -5'
15761 5' -50.4 NC_004065.1 + 208521 0.72 0.909011
Target:  5'- -gCGACAAgaGGAuCAUGUGCgGCAAc -3'
miRNA:   3'- aaGUUGUUgaCCUuGUACACGgCGUU- -5'
15761 5' -50.4 NC_004065.1 + 153162 0.78 0.622247
Target:  5'- -aCAACAGgaGGAACGUGUGgCGCAGg -3'
miRNA:   3'- aaGUUGUUgaCCUUGUACACgGCGUU- -5'
15761 5' -50.4 NC_004065.1 + 147745 1.04 0.021379
Target:  5'- cUUCAACAACUGGAACAUGUGCCGCAAg -3'
miRNA:   3'- -AAGUUGUUGACCUUGUACACGGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.