miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15762 3' -52.3 NC_004065.1 + 127651 0.66 0.994483
Target:  5'- -cUGCGGcgCCGAGGGCggCGGGAcCAu -3'
miRNA:   3'- cuACGUCa-GGCUCCUGgaGUUCUuGU- -5'
15762 3' -52.3 NC_004065.1 + 142624 0.66 0.993984
Target:  5'- cAUGCAGUgCGAauccgcgaucgcgcaGGugCUCAGGGAg- -3'
miRNA:   3'- cUACGUCAgGCU---------------CCugGAGUUCUUgu -5'
15762 3' -52.3 NC_004065.1 + 50004 0.66 0.993632
Target:  5'- cGGUGCgagacgAGUCCG-GGACacgagCUCAGGGGCc -3'
miRNA:   3'- -CUACG------UCAGGCuCCUG-----GAGUUCUUGu -5'
15762 3' -52.3 NC_004065.1 + 3143 0.66 0.993632
Target:  5'- --cGCGGUCCcGGGccaaguuucuACCUCAAGuGGCAu -3'
miRNA:   3'- cuaCGUCAGGcUCC----------UGGAGUUC-UUGU- -5'
15762 3' -52.3 NC_004065.1 + 163030 0.66 0.993632
Target:  5'- --cGCAuGUUCGAccuccgucaguGGACCUaCGAGAGCGc -3'
miRNA:   3'- cuaCGU-CAGGCU-----------CCUGGA-GUUCUUGU- -5'
15762 3' -52.3 NC_004065.1 + 186962 0.66 0.993541
Target:  5'- cGUGCGGUCUGucGcgccgacGCCUCGAGAAg- -3'
miRNA:   3'- cUACGUCAGGCucC-------UGGAGUUCUUgu -5'
15762 3' -52.3 NC_004065.1 + 70684 0.66 0.992678
Target:  5'- --gGCuGcCCGAGGGCCUgGAcguGGACAc -3'
miRNA:   3'- cuaCGuCaGGCUCCUGGAgUU---CUUGU- -5'
15762 3' -52.3 NC_004065.1 + 27723 0.66 0.992678
Target:  5'- --aGCAGaUCCuGAGaGACUUCAAGAGu- -3'
miRNA:   3'- cuaCGUC-AGG-CUC-CUGGAGUUCUUgu -5'
15762 3' -52.3 NC_004065.1 + 172415 0.66 0.992577
Target:  5'- ---uCAGUCCGAGGAggaucugaaccccCCUCAGGuGCc -3'
miRNA:   3'- cuacGUCAGGCUCCU-------------GGAGUUCuUGu -5'
15762 3' -52.3 NC_004065.1 + 209497 0.66 0.991614
Target:  5'- --aGCAGUCCucGGACUU--GGGACAg -3'
miRNA:   3'- cuaCGUCAGGcuCCUGGAguUCUUGU- -5'
15762 3' -52.3 NC_004065.1 + 25701 0.66 0.991614
Target:  5'- aGAUgGCGucGUCCGGGGGCCcgCGAuAACAg -3'
miRNA:   3'- -CUA-CGU--CAGGCUCCUGGa-GUUcUUGU- -5'
15762 3' -52.3 NC_004065.1 + 189636 0.67 0.989122
Target:  5'- cGAUGaCGG-CgGAGGACCcgGAGGACAu -3'
miRNA:   3'- -CUAC-GUCaGgCUCCUGGagUUCUUGU- -5'
15762 3' -52.3 NC_004065.1 + 105044 0.67 0.988271
Target:  5'- --cGCGucuGUCCGGGGuCCUCAguuccacuugccagcGGGGCAg -3'
miRNA:   3'- cuaCGU---CAGGCUCCuGGAGU---------------UCUUGU- -5'
15762 3' -52.3 NC_004065.1 + 22622 0.67 0.987677
Target:  5'- cAUGaCAGguaUCCGAuacGGACC-CAGGAGCAu -3'
miRNA:   3'- cUAC-GUC---AGGCU---CCUGGaGUUCUUGU- -5'
15762 3' -52.3 NC_004065.1 + 78280 0.67 0.987059
Target:  5'- cGUGCGGUggucguagcggcucUCGAGGGCCUCGGacugcguGGGCGa -3'
miRNA:   3'- cUACGUCA--------------GGCUCCUGGAGUU-------CUUGU- -5'
15762 3' -52.3 NC_004065.1 + 185846 0.67 0.984345
Target:  5'- ----gGGUCCGGGGGCgUgAGGGACGc -3'
miRNA:   3'- cuacgUCAGGCUCCUGgAgUUCUUGU- -5'
15762 3' -52.3 NC_004065.1 + 196625 0.67 0.982443
Target:  5'- gGAUGCg--CCGGGGcgagcGCCUCGAGAGg- -3'
miRNA:   3'- -CUACGucaGGCUCC-----UGGAGUUCUUgu -5'
15762 3' -52.3 NC_004065.1 + 43760 0.67 0.982443
Target:  5'- --cGCuccguGUCCG-GGACCUaCAAGAugAu -3'
miRNA:   3'- cuaCGu----CAGGCuCCUGGA-GUUCUugU- -5'
15762 3' -52.3 NC_004065.1 + 16393 0.67 0.982443
Target:  5'- aGAUGacggGGUCCGGGGAUCUUAu-GACAu -3'
miRNA:   3'- -CUACg---UCAGGCUCCUGGAGUucUUGU- -5'
15762 3' -52.3 NC_004065.1 + 92275 0.68 0.973063
Target:  5'- cGUGCAGauagugaacuUCCuacAGGACUUCGAGAACu -3'
miRNA:   3'- cUACGUC----------AGGc--UCCUGGAGUUCUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.