miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15762 5' -59.1 NC_004065.1 + 114124 0.66 0.861136
Target:  5'- --gGCCGAcGAcGG-CCCCGAGCCg-- -3'
miRNA:   3'- uagCGGCUaUU-CCaGGGGCUCGGgac -5'
15762 5' -59.1 NC_004065.1 + 153176 0.66 0.861136
Target:  5'- gAUCGUCGucagcgAGGGaUCCCa-GGCCCUGu -3'
miRNA:   3'- -UAGCGGCua----UUCC-AGGGgcUCGGGAC- -5'
15762 5' -59.1 NC_004065.1 + 148342 0.66 0.85372
Target:  5'- uGUCGCCGuccuuGGUCaCCCG-GUCCg- -3'
miRNA:   3'- -UAGCGGCuauu-CCAG-GGGCuCGGGac -5'
15762 5' -59.1 NC_004065.1 + 102559 0.66 0.85372
Target:  5'- -gCGCCGGggucGGGUCCCgCGGccaucagcGUCCUGa -3'
miRNA:   3'- uaGCGGCUau--UCCAGGG-GCU--------CGGGAC- -5'
15762 5' -59.1 NC_004065.1 + 211473 0.66 0.838338
Target:  5'- aGUCGCCGGaGAGGUCgucggcgUCGAGUCCg- -3'
miRNA:   3'- -UAGCGGCUaUUCCAGg------GGCUCGGGac -5'
15762 5' -59.1 NC_004065.1 + 167694 0.67 0.830384
Target:  5'- gAUCGUCGcc---GUCUCCGAGCUCUGc -3'
miRNA:   3'- -UAGCGGCuauucCAGGGGCUCGGGAC- -5'
15762 5' -59.1 NC_004065.1 + 144254 0.67 0.830384
Target:  5'- gGUCGCCGAcuUAugucAGGUCgagagaCCCGGGCCg-- -3'
miRNA:   3'- -UAGCGGCU--AU----UCCAG------GGGCUCGGgac -5'
15762 5' -59.1 NC_004065.1 + 179737 0.67 0.830384
Target:  5'- gAUCGCCGcgcgGAcggcGGUCUCgGGGCCCg- -3'
miRNA:   3'- -UAGCGGCua--UU----CCAGGGgCUCGGGac -5'
15762 5' -59.1 NC_004065.1 + 133328 0.67 0.830384
Target:  5'- aAUCGCCGucuucGUCCCCucGCCCg- -3'
miRNA:   3'- -UAGCGGCuauucCAGGGGcuCGGGac -5'
15762 5' -59.1 NC_004065.1 + 24972 0.67 0.830384
Target:  5'- gGUCGUgGGUGGGcGUCCCUcGGCCUUu -3'
miRNA:   3'- -UAGCGgCUAUUC-CAGGGGcUCGGGAc -5'
15762 5' -59.1 NC_004065.1 + 95171 0.67 0.813986
Target:  5'- -cCGCCGugcAGGGUCCa-GGGCCCg- -3'
miRNA:   3'- uaGCGGCua-UUCCAGGggCUCGGGac -5'
15762 5' -59.1 NC_004065.1 + 99498 0.67 0.805555
Target:  5'- -cCGCCGuUGGGGUCCCUGGcGCgCa- -3'
miRNA:   3'- uaGCGGCuAUUCCAGGGGCU-CGgGac -5'
15762 5' -59.1 NC_004065.1 + 146568 0.67 0.804704
Target:  5'- cGUCGCgGGUAAGGUgCCgcucgugCCGgAGCCCg- -3'
miRNA:   3'- -UAGCGgCUAUUCCA-GG-------GGC-UCGGGac -5'
15762 5' -59.1 NC_004065.1 + 60087 0.67 0.788266
Target:  5'- -cCGCCGAgcccGUCCCCGAaCCCg- -3'
miRNA:   3'- uaGCGGCUauucCAGGGGCUcGGGac -5'
15762 5' -59.1 NC_004065.1 + 47134 0.67 0.788266
Target:  5'- -cUGCCGuc--GGUCUCCGAGCUCg- -3'
miRNA:   3'- uaGCGGCuauuCCAGGGGCUCGGGac -5'
15762 5' -59.1 NC_004065.1 + 135501 0.67 0.788266
Target:  5'- uUCGCCGugaucuGGUaCUCCGAGUCCa- -3'
miRNA:   3'- uAGCGGCuauu--CCA-GGGGCUCGGGac -5'
15762 5' -59.1 NC_004065.1 + 194393 0.68 0.779423
Target:  5'- uGUCGCCGAUGAcaUCCCCGccGCCg-- -3'
miRNA:   3'- -UAGCGGCUAUUccAGGGGCu-CGGgac -5'
15762 5' -59.1 NC_004065.1 + 137023 0.68 0.779423
Target:  5'- gAUC-CCGcUGAGGa--CCGAGCCCUGg -3'
miRNA:   3'- -UAGcGGCuAUUCCaggGGCUCGGGAC- -5'
15762 5' -59.1 NC_004065.1 + 206880 0.68 0.752197
Target:  5'- aGUCGCCGGUGaguGGGauUCuCCCGGGaCCgUGa -3'
miRNA:   3'- -UAGCGGCUAU---UCC--AG-GGGCUC-GGgAC- -5'
15762 5' -59.1 NC_004065.1 + 67881 0.68 0.733546
Target:  5'- --gGCCGAUcAGGUUgCCCGAGCgUCUGu -3'
miRNA:   3'- uagCGGCUAuUCCAG-GGGCUCG-GGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.