Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15763 | 3' | -59.1 | NC_004065.1 | + | 23185 | 0.67 | 0.788296 |
Target: 5'- -uCGAGCAGGUCg-GCCCCGCcGa-- -3' miRNA: 3'- cuGCUCGUCUAGagCGGGGCGaCcuu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 52800 | 0.66 | 0.854211 |
Target: 5'- aGGCGAGCAGAg--CGCgCCCGCccucGGc- -3' miRNA: 3'- -CUGCUCGUCUagaGCG-GGGCGa---CCuu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 229363 | 0.66 | 0.838731 |
Target: 5'- aGCGAGCGGGUgCUCGCUacgCGCggccGGAc -3' miRNA: 3'- cUGCUCGUCUA-GAGCGGg--GCGa---CCUu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 86274 | 0.66 | 0.838731 |
Target: 5'- aACG-GUAGAUCUgcUGCCCgaGCUGGGg -3' miRNA: 3'- cUGCuCGUCUAGA--GCGGGg-CGACCUu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 513 | 0.66 | 0.838731 |
Target: 5'- aGGCGGGguGAgg-CGCCCCGCcagcgUGuGAAg -3' miRNA: 3'- -CUGCUCguCUagaGCGGGGCG-----AC-CUU- -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 67586 | 0.66 | 0.829913 |
Target: 5'- cACGAcGCuGAUCUCGCCgucggagCUGCUGGu- -3' miRNA: 3'- cUGCU-CGuCUAGAGCGG-------GGCGACCuu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 74920 | 0.67 | 0.805716 |
Target: 5'- aGGCGAcGCAGGgggagCUgGCCUgGUUGGGAa -3' miRNA: 3'- -CUGCU-CGUCUa----GAgCGGGgCGACCUU- -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 104132 | 0.67 | 0.804858 |
Target: 5'- uGGCGAGCGGAUCcucgucgUCGCCuuCCGCggcGGu- -3' miRNA: 3'- -CUGCUCGUCUAG-------AGCGG--GGCGa--CCuu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 212405 | 0.67 | 0.797076 |
Target: 5'- -uUGAGCgAGAUCcucucucccgUCGCCCCGCUcgauguucuGGAGa -3' miRNA: 3'- cuGCUCG-UCUAG----------AGCGGGGCGA---------CCUU- -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 136670 | 0.66 | 0.838731 |
Target: 5'- cGACGGGCGGGUCUgGCCggCgGC-GGGc -3' miRNA: 3'- -CUGCUCGUCUAGAgCGG--GgCGaCCUu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 119185 | 0.66 | 0.830724 |
Target: 5'- cGCGGGCGGcccgCGCCCCGCacUGGu- -3' miRNA: 3'- cUGCUCGUCuagaGCGGGGCG--ACCuu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 68139 | 0.66 | 0.822548 |
Target: 5'- cGACGAGCGucGGUCagGCCgCCGaUGGAGc -3' miRNA: 3'- -CUGCUCGU--CUAGagCGG-GGCgACCUU- -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 187871 | 0.67 | 0.797076 |
Target: 5'- aGAUGAuGCAGGUCUCGUgCaCGCUGu-- -3' miRNA: 3'- -CUGCU-CGUCUAGAGCGgG-GCGACcuu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 120245 | 0.67 | 0.77035 |
Target: 5'- cGCGGcGUAGcgCcUGCCCUGCUGGAc -3' miRNA: 3'- cUGCU-CGUCuaGaGCGGGGCGACCUu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 104003 | 0.67 | 0.77035 |
Target: 5'- gGGCGAGCGG--CUCGUggCGCUGGAGc -3' miRNA: 3'- -CUGCUCGUCuaGAGCGggGCGACCUU- -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 82384 | 0.68 | 0.742587 |
Target: 5'- uGGCGAcGCAgucGAUCUCGCCCgUGCUGu-- -3' miRNA: 3'- -CUGCU-CGU---CUAGAGCGGG-GCGACcuu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 169326 | 0.69 | 0.665186 |
Target: 5'- uGACGGgcGCAGcgccaucaccGUCUCGCCCUGgUGGGc -3' miRNA: 3'- -CUGCU--CGUC----------UAGAGCGGGGCgACCUu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 198132 | 0.71 | 0.586135 |
Target: 5'- uGCGAGCuGGUCaUCGCCgCCGCcaUGGGu -3' miRNA: 3'- cUGCUCGuCUAG-AGCGG-GGCG--ACCUu -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 184909 | 0.73 | 0.462994 |
Target: 5'- cGACGAGUcGccUUCGCCgCCGCUGGAGg -3' miRNA: 3'- -CUGCUCGuCuaGAGCGG-GGCGACCUU- -5' |
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15763 | 3' | -59.1 | NC_004065.1 | + | 147455 | 1.05 | 0.003442 |
Target: 5'- uGACGAGCAGAUCUCGCCCCGCUGGAAg -3' miRNA: 3'- -CUGCUCGUCUAGAGCGGGGCGACCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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