miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15763 5' -59.6 NC_004065.1 + 43331 0.66 0.880061
Target:  5'- --gGcCCGGCGGGGAcgccccACG-CG-CCGCGu -3'
miRNA:   3'- ccaC-GGCCGCCCCU------UGCaGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 387 0.66 0.878052
Target:  5'- --cGCCGGCcGGGAugGcgCAcgagacgguguuuuUCCGCGc -3'
miRNA:   3'- ccaCGGCCGcCCCUugCa-GU--------------AGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 207490 0.66 0.873296
Target:  5'- aGGUGggauCCGGaaCGGGGAAuacCGUUGUCCGgGu -3'
miRNA:   3'- -CCAC----GGCC--GCCCCUU---GCAGUAGGCgU- -5'
15763 5' -59.6 NC_004065.1 + 120171 0.66 0.873296
Target:  5'- aGUGCCaccugGGUgaGGGGAGCGaCG-CCGCGc -3'
miRNA:   3'- cCACGG-----CCG--CCCCUUGCaGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 80404 0.66 0.873296
Target:  5'- cGGcGCCGGUGacGGuGGACGacaaccgggUCGUCUGCAa -3'
miRNA:   3'- -CCaCGGCCGC--CC-CUUGC---------AGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 81997 0.66 0.866339
Target:  5'- --cGgCGGCGGGGAagGCGccCGUgCCGCu -3'
miRNA:   3'- ccaCgGCCGCCCCU--UGCa-GUA-GGCGu -5'
15763 5' -59.6 NC_004065.1 + 76753 0.66 0.866339
Target:  5'- cGGcGCCGGCGGccu-CGUCAUCguccggCGCAu -3'
miRNA:   3'- -CCaCGGCCGCCccuuGCAGUAG------GCGU- -5'
15763 5' -59.6 NC_004065.1 + 221861 0.66 0.859195
Target:  5'- uGGUGCUGGUGGGaaucguucuucaGAugGcCuUCUGCGu -3'
miRNA:   3'- -CCACGGCCGCCC------------CUugCaGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 30587 0.66 0.851869
Target:  5'- --cGCC-GCGGcGAGCGccUCGUCCGCGu -3'
miRNA:   3'- ccaCGGcCGCCcCUUGC--AGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 122233 0.66 0.844366
Target:  5'- cGG-GCCGGCGGGucguuccUGUCG-CCGCu -3'
miRNA:   3'- -CCaCGGCCGCCCcuu----GCAGUaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 148594 0.66 0.844366
Target:  5'- uGGUGCCGGUcaGGAAgGUCAccaggugcUCCaGCGu -3'
miRNA:   3'- -CCACGGCCGccCCUUgCAGU--------AGG-CGU- -5'
15763 5' -59.6 NC_004065.1 + 41446 0.66 0.844366
Target:  5'- gGGUGCUGGcCGuGGaGAGCGUC--CUGCu -3'
miRNA:   3'- -CCACGGCC-GC-CC-CUUGCAGuaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 89091 0.66 0.844366
Target:  5'- cGGUaGCCGGCGuccugggcucGGGAACGUacuaCGCc -3'
miRNA:   3'- -CCA-CGGCCGC----------CCCUUGCAguagGCGu -5'
15763 5' -59.6 NC_004065.1 + 79650 0.67 0.828853
Target:  5'- cGUGUCGGCGcugaugacccGGGAggugccgaACGUgcccgaCAUCCGCAu -3'
miRNA:   3'- cCACGGCCGC----------CCCU--------UGCA------GUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 181980 0.67 0.828853
Target:  5'- gGGUGUCcGUGGGGGAUGagGacCCGCAg -3'
miRNA:   3'- -CCACGGcCGCCCCUUGCagUa-GGCGU- -5'
15763 5' -59.6 NC_004065.1 + 154450 0.67 0.820855
Target:  5'- --cGCCGGCGacacGAACGUCAcggCCGCc -3'
miRNA:   3'- ccaCGGCCGCcc--CUUGCAGUa--GGCGu -5'
15763 5' -59.6 NC_004065.1 + 196117 0.67 0.820855
Target:  5'- --cGCCaacGGCGGGu-ACGgCAUCCGCGg -3'
miRNA:   3'- ccaCGG---CCGCCCcuUGCaGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 149905 0.67 0.820047
Target:  5'- gGGUGCCGGUuggaugaGGGGcGCG-CGgcUCgGCAg -3'
miRNA:   3'- -CCACGGCCG-------CCCCuUGCaGU--AGgCGU- -5'
15763 5' -59.6 NC_004065.1 + 61673 0.67 0.812705
Target:  5'- cGGUGUagaGcGCGaGGGGuccgcagcGCGUCAcgUCCGCGg -3'
miRNA:   3'- -CCACGg--C-CGC-CCCU--------UGCAGU--AGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 153627 0.67 0.812705
Target:  5'- cGGcGCCacucggacGGCGGcGAGC-UCAUCCGCGg -3'
miRNA:   3'- -CCaCGG--------CCGCCcCUUGcAGUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.