Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15763 | 5' | -59.6 | NC_004065.1 | + | 181980 | 0.67 | 0.828853 |
Target: 5'- gGGUGUCcGUGGGGGAUGagGacCCGCAg -3' miRNA: 3'- -CCACGGcCGCCCCUUGCagUa-GGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 132489 | 0.67 | 0.795975 |
Target: 5'- aGGcGCUGGCGcuGAucGCGUCGUUCGCGc -3' miRNA: 3'- -CCaCGGCCGCccCU--UGCAGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 136677 | 0.67 | 0.795975 |
Target: 5'- cGGgucugGCCGGCGGcGGGcCGgcucgagcuuUUAUCCGCc -3' miRNA: 3'- -CCa----CGGCCGCC-CCUuGC----------AGUAGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 153627 | 0.67 | 0.812705 |
Target: 5'- cGGcGCCacucggacGGCGGcGAGC-UCAUCCGCGg -3' miRNA: 3'- -CCaCGG--------CCGCCcCUUGcAGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 154450 | 0.67 | 0.820855 |
Target: 5'- --cGCCGGCGacacGAACGUCAcggCCGCc -3' miRNA: 3'- ccaCGGCCGCcc--CUUGCAGUa--GGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 155407 | 0.67 | 0.80441 |
Target: 5'- cGGUGgCGGCGguuccGGGAAC-UCggCCGCc -3' miRNA: 3'- -CCACgGCCGC-----CCCUUGcAGuaGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 29970 | 0.68 | 0.78741 |
Target: 5'- cGGUGCUGGCGGcGGcGGCGg---CgGCAg -3' miRNA: 3'- -CCACGGCCGCC-CC-UUGCaguaGgCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 174651 | 0.68 | 0.77872 |
Target: 5'- gGGUGCCGGaggacuGGGGu-CGUCG-CCGgGa -3' miRNA: 3'- -CCACGGCCg-----CCCCuuGCAGUaGGCgU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 100402 | 0.68 | 0.77872 |
Target: 5'- --aGCCGGCGGGuccaGUUcUCCGCGc -3' miRNA: 3'- ccaCGGCCGCCCcuugCAGuAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 75593 | 0.68 | 0.769914 |
Target: 5'- --cGCCGGCGGGGGGaGg---CCGCu -3' miRNA: 3'- ccaCGGCCGCCCCUUgCaguaGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 197269 | 0.68 | 0.760999 |
Target: 5'- gGGUGCCGGaucaucggucaCGGGGAGCGaC-UCC-CAc -3' miRNA: 3'- -CCACGGCC-----------GCCCCUUGCaGuAGGcGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 98866 | 0.68 | 0.760999 |
Target: 5'- -cUGCCGGaaCGGGGGuCGUCGUCgcccaCGCGc -3' miRNA: 3'- ccACGGCC--GCCCCUuGCAGUAG-----GCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 172087 | 0.68 | 0.77872 |
Target: 5'- cGGU-UCGaGCGGGGGACGuagcgcggcUCcUCCGCAg -3' miRNA: 3'- -CCAcGGC-CGCCCCUUGC---------AGuAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 166151 | 0.68 | 0.769914 |
Target: 5'- gGGUGaCGuGCGGGuGGugGUCcUUCGCGa -3' miRNA: 3'- -CCACgGC-CGCCC-CUugCAGuAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 229512 | 0.69 | 0.686675 |
Target: 5'- --cGCUGGCGGGGcGCcUCAccccgccuUCCGCGg -3' miRNA: 3'- ccaCGGCCGCCCCuUGcAGU--------AGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 103703 | 0.69 | 0.702815 |
Target: 5'- cGGUgGgCGGCGGGGAGCGccuggcgggcgugaUCGUgaGCAc -3' miRNA: 3'- -CCA-CgGCCGCCCCUUGC--------------AGUAggCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 73120 | 0.69 | 0.682859 |
Target: 5'- cGGUGCCGGCGGaGGAuCGggaccccgaCGCGc -3' miRNA: 3'- -CCACGGCCGCC-CCUuGCaguag----GCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 119612 | 0.69 | 0.714118 |
Target: 5'- --cGCCGGCGGcGGAGgagacgcCGUCggCCGUg -3' miRNA: 3'- ccaCGGCCGCC-CCUU-------GCAGuaGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 115542 | 0.69 | 0.686675 |
Target: 5'- -aUGCgGGCGGGcGAGCGUCugucUCUGUc -3' miRNA: 3'- ccACGgCCGCCC-CUUGCAGu---AGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 107770 | 0.69 | 0.733675 |
Target: 5'- --gGCCGGCGGGGG--GUUAggacgCCGCc -3' miRNA: 3'- ccaCGGCCGCCCCUugCAGUa----GGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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