Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15763 | 5' | -59.6 | NC_004065.1 | + | 229512 | 0.69 | 0.686675 |
Target: 5'- --cGCUGGCGGGGcGCcUCAccccgccuUCCGCGg -3' miRNA: 3'- ccaCGGCCGCCCCuUGcAGU--------AGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 117213 | 0.69 | 0.705648 |
Target: 5'- aGGUGauGGCGGGGAcggACGUCGcgaGCGa -3' miRNA: 3'- -CCACggCCGCCCCU---UGCAGUaggCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 107770 | 0.69 | 0.733675 |
Target: 5'- --gGCCGGCGGGGG--GUUAggacgCCGCc -3' miRNA: 3'- ccaCGGCCGCCCCUugCAGUa----GGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 187455 | 0.69 | 0.705648 |
Target: 5'- -uUGCCGGa---GAACGUCAUCUGCAa -3' miRNA: 3'- ccACGGCCgcccCUUGCAGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 73120 | 0.69 | 0.682859 |
Target: 5'- cGGUGCCGGCGGaGGAuCGggaccccgaCGCGc -3' miRNA: 3'- -CCACGGCCGCC-CCUuGCaguag----GCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 104756 | 0.69 | 0.705648 |
Target: 5'- gGGUGCauguuuuuCGGUauGGGGGGCGUCAcgacaucggcUUCGCAc -3' miRNA: 3'- -CCACG--------GCCG--CCCCUUGCAGU----------AGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 45606 | 0.69 | 0.70376 |
Target: 5'- gGGcGCgGGacgaGGGGAACGgucgagacacggCGUCCGCGa -3' miRNA: 3'- -CCaCGgCCg---CCCCUUGCa-----------GUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 122895 | 0.69 | 0.696186 |
Target: 5'- uGGUGgCGGUaGGGGAugGggaUCA-CCGCGc -3' miRNA: 3'- -CCACgGCCG-CCCCUugC---AGUaGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 166149 | 0.7 | 0.638667 |
Target: 5'- cGGcGCCGGCGGcagcGGcgccGACGUCGUgcaCCGCGa -3' miRNA: 3'- -CCaCGGCCGCC----CC----UUGCAGUA---GGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 33013 | 0.7 | 0.638667 |
Target: 5'- cGGUcGUCGGUc-GGAuCGUCAUCCGCAa -3' miRNA: 3'- -CCA-CGGCCGccCCUuGCAGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 79497 | 0.7 | 0.648305 |
Target: 5'- cGUGUCGGUGGGGGugGUuccCAUCgccgagguaCGCAc -3' miRNA: 3'- cCACGGCCGCCCCUugCA---GUAG---------GCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 128585 | 0.7 | 0.677125 |
Target: 5'- --cGUCGGCGGcGAagGCG-CAUCCGCAc -3' miRNA: 3'- ccaCGGCCGCCcCU--UGCaGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 163497 | 0.71 | 0.619383 |
Target: 5'- cGGUGgCGGCGGcuucaauucuucGGAagaACGUCG-CCGCGa -3' miRNA: 3'- -CCACgGCCGCC------------CCU---UGCAGUaGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 109863 | 0.71 | 0.60975 |
Target: 5'- aGGUGCCgGGCGGuGccaccGGCGUCG-CCGCGg -3' miRNA: 3'- -CCACGG-CCGCCcC-----UUGCAGUaGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 19566 | 0.72 | 0.515184 |
Target: 5'- gGGUGUCGGUGGcGGcgguAGCGUCggCUGCGa -3' miRNA: 3'- -CCACGGCCGCC-CC----UUGCAGuaGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 168645 | 0.72 | 0.552475 |
Target: 5'- cGGaGCCGGCGcGGcGACGUCGUCuCGUu -3' miRNA: 3'- -CCaCGGCCGC-CCcUUGCAGUAG-GCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 167602 | 0.73 | 0.506017 |
Target: 5'- gGGUGCUGGCGGGGc-UGUCGUuaGUg -3' miRNA: 3'- -CCACGGCCGCCCCuuGCAGUAggCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 120952 | 0.73 | 0.506017 |
Target: 5'- gGGU-CCGGguagcgGGGGAACGUgAUCCGCu -3' miRNA: 3'- -CCAcGGCCg-----CCCCUUGCAgUAGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 229153 | 0.73 | 0.487898 |
Target: 5'- -aUGCCGGCGGGGcgcccucgcccGGCaGUCAugcgcUCCGCGu -3' miRNA: 3'- ccACGGCCGCCCC-----------UUG-CAGU-----AGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 152315 | 0.73 | 0.487898 |
Target: 5'- cGGUGCCGGCGGGGAcgaugACGgc-UUCGa- -3' miRNA: 3'- -CCACGGCCGCCCCU-----UGCaguAGGCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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