miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15763 5' -59.6 NC_004065.1 + 147490 1.1 0.002204
Target:  5'- uGGUGCCGGCGGGGAACGUCAUCCGCAu -3'
miRNA:   3'- -CCACGGCCGCCCCUUGCAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 62388 0.79 0.24003
Target:  5'- uGGUGgCGGCGGGGGugG-CggCCGCGg -3'
miRNA:   3'- -CCACgGCCGCCCCUugCaGuaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 54633 0.75 0.378717
Target:  5'- aGGa--CGGUGGGGGAuCGUCGUCCGCc -3'
miRNA:   3'- -CCacgGCCGCCCCUU-GCAGUAGGCGu -5'
15763 5' -59.6 NC_004065.1 + 35629 0.75 0.371019
Target:  5'- cGGcGgCGGCGGGG-AUGUCAUCgGCGa -3'
miRNA:   3'- -CCaCgGCCGCCCCuUGCAGUAGgCGU- -5'
15763 5' -59.6 NC_004065.1 + 203509 0.74 0.452621
Target:  5'- uGUGCCGGCGGGGucCGUCG--CGUg -3'
miRNA:   3'- cCACGGCCGCCCCuuGCAGUagGCGu -5'
15763 5' -59.6 NC_004065.1 + 146031 0.73 0.496921
Target:  5'- --aGCUGGCGGGcGACGUCAU-CGCGa -3'
miRNA:   3'- ccaCGGCCGCCCcUUGCAGUAgGCGU- -5'
15763 5' -59.6 NC_004065.1 + 167602 0.73 0.506017
Target:  5'- gGGUGCUGGCGGGGc-UGUCGUuaGUg -3'
miRNA:   3'- -CCACGGCCGCCCCuuGCAGUAggCGu -5'
15763 5' -59.6 NC_004065.1 + 120952 0.73 0.506017
Target:  5'- gGGU-CCGGguagcgGGGGAACGUgAUCCGCu -3'
miRNA:   3'- -CCAcGGCCg-----CCCCUUGCAgUAGGCGu -5'
15763 5' -59.6 NC_004065.1 + 229153 0.73 0.487898
Target:  5'- -aUGCCGGCGGGGcgcccucgcccGGCaGUCAugcgcUCCGCGu -3'
miRNA:   3'- ccACGGCCGCCCC-----------UUG-CAGU-----AGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 152315 0.73 0.487898
Target:  5'- cGGUGCCGGCGGGGAcgaugACGgc-UUCGa- -3'
miRNA:   3'- -CCACGGCCGCCCCU-----UGCaguAGGCgu -5'
15763 5' -59.6 NC_004065.1 + 168645 0.72 0.552475
Target:  5'- cGGaGCCGGCGcGGcGACGUCGUCuCGUu -3'
miRNA:   3'- -CCaCGGCCGC-CCcUUGCAGUAG-GCGu -5'
15763 5' -59.6 NC_004065.1 + 19566 0.72 0.515184
Target:  5'- gGGUGUCGGUGGcGGcgguAGCGUCggCUGCGa -3'
miRNA:   3'- -CCACGGCCGCC-CC----UUGCAGuaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 163497 0.71 0.619383
Target:  5'- cGGUGgCGGCGGcuucaauucuucGGAagaACGUCG-CCGCGa -3'
miRNA:   3'- -CCACgGCCGCC------------CCU---UGCAGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 109863 0.71 0.60975
Target:  5'- aGGUGCCgGGCGGuGccaccGGCGUCG-CCGCGg -3'
miRNA:   3'- -CCACGG-CCGCCcC-----UUGCAGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 128585 0.7 0.677125
Target:  5'- --cGUCGGCGGcGAagGCG-CAUCCGCAc -3'
miRNA:   3'- ccaCGGCCGCCcCU--UGCaGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 166149 0.7 0.638667
Target:  5'- cGGcGCCGGCGGcagcGGcgccGACGUCGUgcaCCGCGa -3'
miRNA:   3'- -CCaCGGCCGCC----CC----UUGCAGUA---GGCGU- -5'
15763 5' -59.6 NC_004065.1 + 33013 0.7 0.638667
Target:  5'- cGGUcGUCGGUc-GGAuCGUCAUCCGCAa -3'
miRNA:   3'- -CCA-CGGCCGccCCUuGCAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 79497 0.7 0.648305
Target:  5'- cGUGUCGGUGGGGGugGUuccCAUCgccgagguaCGCAc -3'
miRNA:   3'- cCACGGCCGCCCCUugCA---GUAG---------GCGU- -5'
15763 5' -59.6 NC_004065.1 + 115542 0.69 0.686675
Target:  5'- -aUGCgGGCGGGcGAGCGUCugucUCUGUc -3'
miRNA:   3'- ccACGgCCGCCC-CUUGCAGu---AGGCGu -5'
15763 5' -59.6 NC_004065.1 + 107770 0.69 0.733675
Target:  5'- --gGCCGGCGGGGG--GUUAggacgCCGCc -3'
miRNA:   3'- ccaCGGCCGCCCCUugCAGUa----GGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.