Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15763 | 5' | -59.6 | NC_004065.1 | + | 136677 | 0.67 | 0.795975 |
Target: 5'- cGGgucugGCCGGCGGcGGGcCGgcucgagcuuUUAUCCGCc -3' miRNA: 3'- -CCa----CGGCCGCC-CCUuGC----------AGUAGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 181980 | 0.67 | 0.828853 |
Target: 5'- gGGUGUCcGUGGGGGAUGagGacCCGCAg -3' miRNA: 3'- -CCACGGcCGCCCCUUGCagUa-GGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 79650 | 0.67 | 0.828853 |
Target: 5'- cGUGUCGGCGcugaugacccGGGAggugccgaACGUgcccgaCAUCCGCAu -3' miRNA: 3'- cCACGGCCGC----------CCCU--------UGCA------GUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 154450 | 0.67 | 0.820855 |
Target: 5'- --cGCCGGCGacacGAACGUCAcggCCGCc -3' miRNA: 3'- ccaCGGCCGCcc--CUUGCAGUa--GGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 196117 | 0.67 | 0.820855 |
Target: 5'- --cGCCaacGGCGGGu-ACGgCAUCCGCGg -3' miRNA: 3'- ccaCGG---CCGCCCcuUGCaGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 153627 | 0.67 | 0.812705 |
Target: 5'- cGGcGCCacucggacGGCGGcGAGC-UCAUCCGCGg -3' miRNA: 3'- -CCaCGG--------CCGCCcCUUGcAGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 107770 | 0.67 | 0.812705 |
Target: 5'- cGGUGUCGGCGcGGGAGCag---CgGCGa -3' miRNA: 3'- -CCACGGCCGC-CCCUUGcaguaGgCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 155407 | 0.67 | 0.80441 |
Target: 5'- cGGUGgCGGCGguuccGGGAAC-UCggCCGCc -3' miRNA: 3'- -CCACgGCCGC-----CCCUUGcAGuaGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 132489 | 0.67 | 0.795975 |
Target: 5'- aGGcGCUGGCGcuGAucGCGUCGUUCGCGc -3' miRNA: 3'- -CCaCGGCCGCccCU--UGCAGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 116987 | 0.67 | 0.795975 |
Target: 5'- gGGUGCUGGCGGaacagcGGAuauuCGUUgAUCgGCAc -3' miRNA: 3'- -CCACGGCCGCC------CCUu---GCAG-UAGgCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 119623 | 0.67 | 0.80441 |
Target: 5'- uGUGCCGGgaCGGGGAGCGag--CCGa- -3' miRNA: 3'- cCACGGCC--GCCCCUUGCaguaGGCgu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 61673 | 0.67 | 0.812705 |
Target: 5'- cGGUGUagaGcGCGaGGGGuccgcagcGCGUCAcgUCCGCGg -3' miRNA: 3'- -CCACGg--C-CGC-CCCU--------UGCAGU--AGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 149905 | 0.67 | 0.820047 |
Target: 5'- gGGUGCCGGUuggaugaGGGGcGCG-CGgcUCgGCAg -3' miRNA: 3'- -CCACGGCCG-------CCCCuUGCaGU--AGgCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 387 | 0.66 | 0.878052 |
Target: 5'- --cGCCGGCcGGGAugGcgCAcgagacgguguuuuUCCGCGc -3' miRNA: 3'- ccaCGGCCGcCCCUugCa-GU--------------AGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 122233 | 0.66 | 0.844366 |
Target: 5'- cGG-GCCGGCGGGucguuccUGUCG-CCGCu -3' miRNA: 3'- -CCaCGGCCGCCCcuu----GCAGUaGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 30587 | 0.66 | 0.851869 |
Target: 5'- --cGCC-GCGGcGAGCGccUCGUCCGCGu -3' miRNA: 3'- ccaCGGcCGCCcCUUGC--AGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 221861 | 0.66 | 0.859195 |
Target: 5'- uGGUGCUGGUGGGaaucguucuucaGAugGcCuUCUGCGu -3' miRNA: 3'- -CCACGGCCGCCC------------CUugCaGuAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 81997 | 0.66 | 0.866339 |
Target: 5'- --cGgCGGCGGGGAagGCGccCGUgCCGCu -3' miRNA: 3'- ccaCgGCCGCCCCU--UGCa-GUA-GGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 76753 | 0.66 | 0.866339 |
Target: 5'- cGGcGCCGGCGGccu-CGUCAUCguccggCGCAu -3' miRNA: 3'- -CCaCGGCCGCCccuuGCAGUAG------GCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 120171 | 0.66 | 0.873296 |
Target: 5'- aGUGCCaccugGGUgaGGGGAGCGaCG-CCGCGc -3' miRNA: 3'- cCACGG-----CCG--CCCCUUGCaGUaGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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