miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15763 5' -59.6 NC_004065.1 + 127487 0.69 0.686675
Target:  5'- cGG-GCgCGGC-GGGAGCGUUGUCCaGCu -3'
miRNA:   3'- -CCaCG-GCCGcCCCUUGCAGUAGG-CGu -5'
15763 5' -59.6 NC_004065.1 + 104916 0.69 0.686675
Target:  5'- uGGUGCCGGCGGcGuacACG-CAcuaCCGCAa -3'
miRNA:   3'- -CCACGGCCGCCcCu--UGCaGUa--GGCGU- -5'
15763 5' -59.6 NC_004065.1 + 115542 0.69 0.686675
Target:  5'- -aUGCgGGCGGGcGAGCGUCugucUCUGUc -3'
miRNA:   3'- ccACGgCCGCCC-CUUGCAGu---AGGCGu -5'
15763 5' -59.6 NC_004065.1 + 122895 0.69 0.696186
Target:  5'- uGGUGgCGGUaGGGGAugGggaUCA-CCGCGc -3'
miRNA:   3'- -CCACgGCCG-CCCCUugC---AGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 103703 0.69 0.702815
Target:  5'- cGGUgGgCGGCGGGGAGCGccuggcgggcgugaUCGUgaGCAc -3'
miRNA:   3'- -CCA-CgGCCGCCCCUUGC--------------AGUAggCGU- -5'
15763 5' -59.6 NC_004065.1 + 45606 0.69 0.70376
Target:  5'- gGGcGCgGGacgaGGGGAACGgucgagacacggCGUCCGCGa -3'
miRNA:   3'- -CCaCGgCCg---CCCCUUGCa-----------GUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 187455 0.69 0.705648
Target:  5'- -uUGCCGGa---GAACGUCAUCUGCAa -3'
miRNA:   3'- ccACGGCCgcccCUUGCAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 117213 0.69 0.705648
Target:  5'- aGGUGauGGCGGGGAcggACGUCGcgaGCGa -3'
miRNA:   3'- -CCACggCCGCCCCU---UGCAGUaggCGU- -5'
15763 5' -59.6 NC_004065.1 + 104756 0.69 0.705648
Target:  5'- gGGUGCauguuuuuCGGUauGGGGGGCGUCAcgacaucggcUUCGCAc -3'
miRNA:   3'- -CCACG--------GCCG--CCCCUUGCAGU----------AGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 119612 0.69 0.714118
Target:  5'- --cGCCGGCGGcGGAGgagacgcCGUCggCCGUg -3'
miRNA:   3'- ccaCGGCCGCC-CCUU-------GCAGuaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 208021 0.69 0.715056
Target:  5'- aGUGCCGGCGGcGAugacCGUCGgcguggCCGUg -3'
miRNA:   3'- cCACGGCCGCCcCUu---GCAGUa-----GGCGu -5'
15763 5' -59.6 NC_004065.1 + 107770 0.69 0.733675
Target:  5'- --gGCCGGCGGGGG--GUUAggacgCCGCc -3'
miRNA:   3'- ccaCGGCCGCCCCUugCAGUa----GGCGu -5'
15763 5' -59.6 NC_004065.1 + 98866 0.68 0.760999
Target:  5'- -cUGCCGGaaCGGGGGuCGUCGUCgcccaCGCGc -3'
miRNA:   3'- ccACGGCC--GCCCCUuGCAGUAG-----GCGU- -5'
15763 5' -59.6 NC_004065.1 + 197269 0.68 0.760999
Target:  5'- gGGUGCCGGaucaucggucaCGGGGAGCGaC-UCC-CAc -3'
miRNA:   3'- -CCACGGCC-----------GCCCCUUGCaGuAGGcGU- -5'
15763 5' -59.6 NC_004065.1 + 75593 0.68 0.769914
Target:  5'- --cGCCGGCGGGGGGaGg---CCGCu -3'
miRNA:   3'- ccaCGGCCGCCCCUUgCaguaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 166151 0.68 0.769914
Target:  5'- gGGUGaCGuGCGGGuGGugGUCcUUCGCGa -3'
miRNA:   3'- -CCACgGC-CGCCC-CUugCAGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 174651 0.68 0.77872
Target:  5'- gGGUGCCGGaggacuGGGGu-CGUCG-CCGgGa -3'
miRNA:   3'- -CCACGGCCg-----CCCCuuGCAGUaGGCgU- -5'
15763 5' -59.6 NC_004065.1 + 100402 0.68 0.77872
Target:  5'- --aGCCGGCGGGuccaGUUcUCCGCGc -3'
miRNA:   3'- ccaCGGCCGCCCcuugCAGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 172087 0.68 0.77872
Target:  5'- cGGU-UCGaGCGGGGGACGuagcgcggcUCcUCCGCAg -3'
miRNA:   3'- -CCAcGGC-CGCCCCUUGC---------AGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 29970 0.68 0.78741
Target:  5'- cGGUGCUGGCGGcGGcGGCGg---CgGCAg -3'
miRNA:   3'- -CCACGGCCGCC-CC-UUGCaguaGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.