miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15763 5' -59.6 NC_004065.1 + 229512 0.69 0.686675
Target:  5'- --cGCUGGCGGGGcGCcUCAccccgccuUCCGCGg -3'
miRNA:   3'- ccaCGGCCGCCCCuUGcAGU--------AGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 229153 0.73 0.487898
Target:  5'- -aUGCCGGCGGGGcgcccucgcccGGCaGUCAugcgcUCCGCGu -3'
miRNA:   3'- ccACGGCCGCCCC-----------UUG-CAGU-----AGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 221861 0.66 0.859195
Target:  5'- uGGUGCUGGUGGGaaucguucuucaGAugGcCuUCUGCGu -3'
miRNA:   3'- -CCACGGCCGCCC------------CUugCaGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 208021 0.69 0.715056
Target:  5'- aGUGCCGGCGGcGAugacCGUCGgcguggCCGUg -3'
miRNA:   3'- cCACGGCCGCCcCUu---GCAGUa-----GGCGu -5'
15763 5' -59.6 NC_004065.1 + 207490 0.66 0.873296
Target:  5'- aGGUGggauCCGGaaCGGGGAAuacCGUUGUCCGgGu -3'
miRNA:   3'- -CCAC----GGCC--GCCCCUU---GCAGUAGGCgU- -5'
15763 5' -59.6 NC_004065.1 + 203509 0.74 0.452621
Target:  5'- uGUGCCGGCGGGGucCGUCG--CGUg -3'
miRNA:   3'- cCACGGCCGCCCCuuGCAGUagGCGu -5'
15763 5' -59.6 NC_004065.1 + 197269 0.68 0.760999
Target:  5'- gGGUGCCGGaucaucggucaCGGGGAGCGaC-UCC-CAc -3'
miRNA:   3'- -CCACGGCC-----------GCCCCUUGCaGuAGGcGU- -5'
15763 5' -59.6 NC_004065.1 + 196117 0.67 0.820855
Target:  5'- --cGCCaacGGCGGGu-ACGgCAUCCGCGg -3'
miRNA:   3'- ccaCGG---CCGCCCcuUGCaGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 187455 0.69 0.705648
Target:  5'- -uUGCCGGa---GAACGUCAUCUGCAa -3'
miRNA:   3'- ccACGGCCgcccCUUGCAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 181980 0.67 0.828853
Target:  5'- gGGUGUCcGUGGGGGAUGagGacCCGCAg -3'
miRNA:   3'- -CCACGGcCGCCCCUUGCagUa-GGCGU- -5'
15763 5' -59.6 NC_004065.1 + 174651 0.68 0.77872
Target:  5'- gGGUGCCGGaggacuGGGGu-CGUCG-CCGgGa -3'
miRNA:   3'- -CCACGGCCg-----CCCCuuGCAGUaGGCgU- -5'
15763 5' -59.6 NC_004065.1 + 172087 0.68 0.77872
Target:  5'- cGGU-UCGaGCGGGGGACGuagcgcggcUCcUCCGCAg -3'
miRNA:   3'- -CCAcGGC-CGCCCCUUGC---------AGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 168645 0.72 0.552475
Target:  5'- cGGaGCCGGCGcGGcGACGUCGUCuCGUu -3'
miRNA:   3'- -CCaCGGCCGC-CCcUUGCAGUAG-GCGu -5'
15763 5' -59.6 NC_004065.1 + 167602 0.73 0.506017
Target:  5'- gGGUGCUGGCGGGGc-UGUCGUuaGUg -3'
miRNA:   3'- -CCACGGCCGCCCCuuGCAGUAggCGu -5'
15763 5' -59.6 NC_004065.1 + 166151 0.68 0.769914
Target:  5'- gGGUGaCGuGCGGGuGGugGUCcUUCGCGa -3'
miRNA:   3'- -CCACgGC-CGCCC-CUugCAGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 166149 0.7 0.638667
Target:  5'- cGGcGCCGGCGGcagcGGcgccGACGUCGUgcaCCGCGa -3'
miRNA:   3'- -CCaCGGCCGCC----CC----UUGCAGUA---GGCGU- -5'
15763 5' -59.6 NC_004065.1 + 163497 0.71 0.619383
Target:  5'- cGGUGgCGGCGGcuucaauucuucGGAagaACGUCG-CCGCGa -3'
miRNA:   3'- -CCACgGCCGCC------------CCU---UGCAGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 155407 0.67 0.80441
Target:  5'- cGGUGgCGGCGguuccGGGAAC-UCggCCGCc -3'
miRNA:   3'- -CCACgGCCGC-----CCCUUGcAGuaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 154450 0.67 0.820855
Target:  5'- --cGCCGGCGacacGAACGUCAcggCCGCc -3'
miRNA:   3'- ccaCGGCCGCcc--CUUGCAGUa--GGCGu -5'
15763 5' -59.6 NC_004065.1 + 153627 0.67 0.812705
Target:  5'- cGGcGCCacucggacGGCGGcGAGC-UCAUCCGCGg -3'
miRNA:   3'- -CCaCGG--------CCGCCcCUUGcAGUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.