miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15763 5' -59.6 NC_004065.1 + 152315 0.73 0.487898
Target:  5'- cGGUGCCGGCGGGGAcgaugACGgc-UUCGa- -3'
miRNA:   3'- -CCACGGCCGCCCCU-----UGCaguAGGCgu -5'
15763 5' -59.6 NC_004065.1 + 149905 0.67 0.820047
Target:  5'- gGGUGCCGGUuggaugaGGGGcGCG-CGgcUCgGCAg -3'
miRNA:   3'- -CCACGGCCG-------CCCCuUGCaGU--AGgCGU- -5'
15763 5' -59.6 NC_004065.1 + 148594 0.66 0.844366
Target:  5'- uGGUGCCGGUcaGGAAgGUCAccaggugcUCCaGCGu -3'
miRNA:   3'- -CCACGGCCGccCCUUgCAGU--------AGG-CGU- -5'
15763 5' -59.6 NC_004065.1 + 147490 1.1 0.002204
Target:  5'- uGGUGCCGGCGGGGAACGUCAUCCGCAu -3'
miRNA:   3'- -CCACGGCCGCCCCUUGCAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 146031 0.73 0.496921
Target:  5'- --aGCUGGCGGGcGACGUCAU-CGCGa -3'
miRNA:   3'- ccaCGGCCGCCCcUUGCAGUAgGCGU- -5'
15763 5' -59.6 NC_004065.1 + 136677 0.67 0.795975
Target:  5'- cGGgucugGCCGGCGGcGGGcCGgcucgagcuuUUAUCCGCc -3'
miRNA:   3'- -CCa----CGGCCGCC-CCUuGC----------AGUAGGCGu -5'
15763 5' -59.6 NC_004065.1 + 132489 0.67 0.795975
Target:  5'- aGGcGCUGGCGcuGAucGCGUCGUUCGCGc -3'
miRNA:   3'- -CCaCGGCCGCccCU--UGCAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 128585 0.7 0.677125
Target:  5'- --cGUCGGCGGcGAagGCG-CAUCCGCAc -3'
miRNA:   3'- ccaCGGCCGCCcCU--UGCaGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 127487 0.69 0.686675
Target:  5'- cGG-GCgCGGC-GGGAGCGUUGUCCaGCu -3'
miRNA:   3'- -CCaCG-GCCGcCCCUUGCAGUAGG-CGu -5'
15763 5' -59.6 NC_004065.1 + 122895 0.69 0.696186
Target:  5'- uGGUGgCGGUaGGGGAugGggaUCA-CCGCGc -3'
miRNA:   3'- -CCACgGCCG-CCCCUugC---AGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 122233 0.66 0.844366
Target:  5'- cGG-GCCGGCGGGucguuccUGUCG-CCGCu -3'
miRNA:   3'- -CCaCGGCCGCCCcuu----GCAGUaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 120952 0.73 0.506017
Target:  5'- gGGU-CCGGguagcgGGGGAACGUgAUCCGCu -3'
miRNA:   3'- -CCAcGGCCg-----CCCCUUGCAgUAGGCGu -5'
15763 5' -59.6 NC_004065.1 + 120171 0.66 0.873296
Target:  5'- aGUGCCaccugGGUgaGGGGAGCGaCG-CCGCGc -3'
miRNA:   3'- cCACGG-----CCG--CCCCUUGCaGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 119623 0.67 0.80441
Target:  5'- uGUGCCGGgaCGGGGAGCGag--CCGa- -3'
miRNA:   3'- cCACGGCC--GCCCCUUGCaguaGGCgu -5'
15763 5' -59.6 NC_004065.1 + 119612 0.69 0.714118
Target:  5'- --cGCCGGCGGcGGAGgagacgcCGUCggCCGUg -3'
miRNA:   3'- ccaCGGCCGCC-CCUU-------GCAGuaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 117213 0.69 0.705648
Target:  5'- aGGUGauGGCGGGGAcggACGUCGcgaGCGa -3'
miRNA:   3'- -CCACggCCGCCCCU---UGCAGUaggCGU- -5'
15763 5' -59.6 NC_004065.1 + 116987 0.67 0.795975
Target:  5'- gGGUGCUGGCGGaacagcGGAuauuCGUUgAUCgGCAc -3'
miRNA:   3'- -CCACGGCCGCC------CCUu---GCAG-UAGgCGU- -5'
15763 5' -59.6 NC_004065.1 + 115542 0.69 0.686675
Target:  5'- -aUGCgGGCGGGcGAGCGUCugucUCUGUc -3'
miRNA:   3'- ccACGgCCGCCC-CUUGCAGu---AGGCGu -5'
15763 5' -59.6 NC_004065.1 + 109863 0.71 0.60975
Target:  5'- aGGUGCCgGGCGGuGccaccGGCGUCG-CCGCGg -3'
miRNA:   3'- -CCACGG-CCGCCcC-----UUGCAGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 107770 0.69 0.733675
Target:  5'- --gGCCGGCGGGGG--GUUAggacgCCGCc -3'
miRNA:   3'- ccaCGGCCGCCCCUugCAGUa----GGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.