miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15763 5' -59.6 NC_004065.1 + 107770 0.67 0.812705
Target:  5'- cGGUGUCGGCGcGGGAGCag---CgGCGa -3'
miRNA:   3'- -CCACGGCCGC-CCCUUGcaguaGgCGU- -5'
15763 5' -59.6 NC_004065.1 + 104916 0.69 0.686675
Target:  5'- uGGUGCCGGCGGcGuacACG-CAcuaCCGCAa -3'
miRNA:   3'- -CCACGGCCGCCcCu--UGCaGUa--GGCGU- -5'
15763 5' -59.6 NC_004065.1 + 104756 0.69 0.705648
Target:  5'- gGGUGCauguuuuuCGGUauGGGGGGCGUCAcgacaucggcUUCGCAc -3'
miRNA:   3'- -CCACG--------GCCG--CCCCUUGCAGU----------AGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 103703 0.69 0.702815
Target:  5'- cGGUgGgCGGCGGGGAGCGccuggcgggcgugaUCGUgaGCAc -3'
miRNA:   3'- -CCA-CgGCCGCCCCUUGC--------------AGUAggCGU- -5'
15763 5' -59.6 NC_004065.1 + 100402 0.68 0.77872
Target:  5'- --aGCCGGCGGGuccaGUUcUCCGCGc -3'
miRNA:   3'- ccaCGGCCGCCCcuugCAGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 98866 0.68 0.760999
Target:  5'- -cUGCCGGaaCGGGGGuCGUCGUCgcccaCGCGc -3'
miRNA:   3'- ccACGGCC--GCCCCUuGCAGUAG-----GCGU- -5'
15763 5' -59.6 NC_004065.1 + 89091 0.66 0.844366
Target:  5'- cGGUaGCCGGCGuccugggcucGGGAACGUacuaCGCc -3'
miRNA:   3'- -CCA-CGGCCGC----------CCCUUGCAguagGCGu -5'
15763 5' -59.6 NC_004065.1 + 81997 0.66 0.866339
Target:  5'- --cGgCGGCGGGGAagGCGccCGUgCCGCu -3'
miRNA:   3'- ccaCgGCCGCCCCU--UGCa-GUA-GGCGu -5'
15763 5' -59.6 NC_004065.1 + 80404 0.66 0.873296
Target:  5'- cGGcGCCGGUGacGGuGGACGacaaccgggUCGUCUGCAa -3'
miRNA:   3'- -CCaCGGCCGC--CC-CUUGC---------AGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 79650 0.67 0.828853
Target:  5'- cGUGUCGGCGcugaugacccGGGAggugccgaACGUgcccgaCAUCCGCAu -3'
miRNA:   3'- cCACGGCCGC----------CCCU--------UGCA------GUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 79497 0.7 0.648305
Target:  5'- cGUGUCGGUGGGGGugGUuccCAUCgccgagguaCGCAc -3'
miRNA:   3'- cCACGGCCGCCCCUugCA---GUAG---------GCGU- -5'
15763 5' -59.6 NC_004065.1 + 76753 0.66 0.866339
Target:  5'- cGGcGCCGGCGGccu-CGUCAUCguccggCGCAu -3'
miRNA:   3'- -CCaCGGCCGCCccuuGCAGUAG------GCGU- -5'
15763 5' -59.6 NC_004065.1 + 75593 0.68 0.769914
Target:  5'- --cGCCGGCGGGGGGaGg---CCGCu -3'
miRNA:   3'- ccaCGGCCGCCCCUUgCaguaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 73120 0.69 0.682859
Target:  5'- cGGUGCCGGCGGaGGAuCGggaccccgaCGCGc -3'
miRNA:   3'- -CCACGGCCGCC-CCUuGCaguag----GCGU- -5'
15763 5' -59.6 NC_004065.1 + 62388 0.79 0.24003
Target:  5'- uGGUGgCGGCGGGGGugG-CggCCGCGg -3'
miRNA:   3'- -CCACgGCCGCCCCUugCaGuaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 61673 0.67 0.812705
Target:  5'- cGGUGUagaGcGCGaGGGGuccgcagcGCGUCAcgUCCGCGg -3'
miRNA:   3'- -CCACGg--C-CGC-CCCU--------UGCAGU--AGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 54633 0.75 0.378717
Target:  5'- aGGa--CGGUGGGGGAuCGUCGUCCGCc -3'
miRNA:   3'- -CCacgGCCGCCCCUU-GCAGUAGGCGu -5'
15763 5' -59.6 NC_004065.1 + 45606 0.69 0.70376
Target:  5'- gGGcGCgGGacgaGGGGAACGgucgagacacggCGUCCGCGa -3'
miRNA:   3'- -CCaCGgCCg---CCCCUUGCa-----------GUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 43331 0.66 0.880061
Target:  5'- --gGcCCGGCGGGGAcgccccACG-CG-CCGCGu -3'
miRNA:   3'- ccaC-GGCCGCCCCU------UGCaGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 41446 0.66 0.844366
Target:  5'- gGGUGCUGGcCGuGGaGAGCGUC--CUGCu -3'
miRNA:   3'- -CCACGGCC-GC-CC-CUUGCAGuaGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.