miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15763 5' -59.6 NC_004065.1 + 187455 0.69 0.705648
Target:  5'- -uUGCCGGa---GAACGUCAUCUGCAa -3'
miRNA:   3'- ccACGGCCgcccCUUGCAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 19566 0.72 0.515184
Target:  5'- gGGUGUCGGUGGcGGcgguAGCGUCggCUGCGa -3'
miRNA:   3'- -CCACGGCCGCC-CC----UUGCAGuaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 167602 0.73 0.506017
Target:  5'- gGGUGCUGGCGGGGc-UGUCGUuaGUg -3'
miRNA:   3'- -CCACGGCCGCCCCuuGCAGUAggCGu -5'
15763 5' -59.6 NC_004065.1 + 120952 0.73 0.506017
Target:  5'- gGGU-CCGGguagcgGGGGAACGUgAUCCGCu -3'
miRNA:   3'- -CCAcGGCCg-----CCCCUUGCAgUAGGCGu -5'
15763 5' -59.6 NC_004065.1 + 229153 0.73 0.487898
Target:  5'- -aUGCCGGCGGGGcgcccucgcccGGCaGUCAugcgcUCCGCGu -3'
miRNA:   3'- ccACGGCCGCCCC-----------UUG-CAGU-----AGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 152315 0.73 0.487898
Target:  5'- cGGUGCCGGCGGGGAcgaugACGgc-UUCGa- -3'
miRNA:   3'- -CCACGGCCGCCCCU-----UGCaguAGGCgu -5'
15763 5' -59.6 NC_004065.1 + 54633 0.75 0.378717
Target:  5'- aGGa--CGGUGGGGGAuCGUCGUCCGCc -3'
miRNA:   3'- -CCacgGCCGCCCCUU-GCAGUAGGCGu -5'
15763 5' -59.6 NC_004065.1 + 35629 0.75 0.371019
Target:  5'- cGGcGgCGGCGGGG-AUGUCAUCgGCGa -3'
miRNA:   3'- -CCaCgGCCGCCCCuUGCAGUAGgCGU- -5'
15763 5' -59.6 NC_004065.1 + 62388 0.79 0.24003
Target:  5'- uGGUGgCGGCGGGGGugG-CggCCGCGg -3'
miRNA:   3'- -CCACgGCCGCCCCUugCaGuaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 168645 0.72 0.552475
Target:  5'- cGGaGCCGGCGcGGcGACGUCGUCuCGUu -3'
miRNA:   3'- -CCaCGGCCGC-CCcUUGCAGUAG-GCGu -5'
15763 5' -59.6 NC_004065.1 + 109863 0.71 0.60975
Target:  5'- aGGUGCCgGGCGGuGccaccGGCGUCG-CCGCGg -3'
miRNA:   3'- -CCACGG-CCGCCcC-----UUGCAGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 163497 0.71 0.619383
Target:  5'- cGGUGgCGGCGGcuucaauucuucGGAagaACGUCG-CCGCGa -3'
miRNA:   3'- -CCACgGCCGCC------------CCU---UGCAGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 117213 0.69 0.705648
Target:  5'- aGGUGauGGCGGGGAcggACGUCGcgaGCGa -3'
miRNA:   3'- -CCACggCCGCCCCU---UGCAGUaggCGU- -5'
15763 5' -59.6 NC_004065.1 + 104756 0.69 0.705648
Target:  5'- gGGUGCauguuuuuCGGUauGGGGGGCGUCAcgacaucggcUUCGCAc -3'
miRNA:   3'- -CCACG--------GCCG--CCCCUUGCAGU----------AGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 45606 0.69 0.70376
Target:  5'- gGGcGCgGGacgaGGGGAACGgucgagacacggCGUCCGCGa -3'
miRNA:   3'- -CCaCGgCCg---CCCCUUGCa-----------GUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 122895 0.69 0.696186
Target:  5'- uGGUGgCGGUaGGGGAugGggaUCA-CCGCGc -3'
miRNA:   3'- -CCACgGCCG-CCCCUugC---AGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 115542 0.69 0.686675
Target:  5'- -aUGCgGGCGGGcGAGCGUCugucUCUGUc -3'
miRNA:   3'- ccACGgCCGCCC-CUUGCAGu---AGGCGu -5'
15763 5' -59.6 NC_004065.1 + 73120 0.69 0.682859
Target:  5'- cGGUGCCGGCGGaGGAuCGggaccccgaCGCGc -3'
miRNA:   3'- -CCACGGCCGCC-CCUuGCaguag----GCGU- -5'
15763 5' -59.6 NC_004065.1 + 128585 0.7 0.677125
Target:  5'- --cGUCGGCGGcGAagGCG-CAUCCGCAc -3'
miRNA:   3'- ccaCGGCCGCCcCU--UGCaGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 166149 0.7 0.638667
Target:  5'- cGGcGCCGGCGGcagcGGcgccGACGUCGUgcaCCGCGa -3'
miRNA:   3'- -CCaCGGCCGCC----CC----UUGCAGUA---GGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.