miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15763 5' -59.6 NC_004065.1 + 132489 0.67 0.795975
Target:  5'- aGGcGCUGGCGcuGAucGCGUCGUUCGCGc -3'
miRNA:   3'- -CCaCGGCCGCccCU--UGCAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 136677 0.67 0.795975
Target:  5'- cGGgucugGCCGGCGGcGGGcCGgcucgagcuuUUAUCCGCc -3'
miRNA:   3'- -CCa----CGGCCGCC-CCUuGC----------AGUAGGCGu -5'
15763 5' -59.6 NC_004065.1 + 155407 0.67 0.80441
Target:  5'- cGGUGgCGGCGguuccGGGAAC-UCggCCGCc -3'
miRNA:   3'- -CCACgGCCGC-----CCCUUGcAGuaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 107770 0.67 0.812705
Target:  5'- cGGUGUCGGCGcGGGAGCag---CgGCGa -3'
miRNA:   3'- -CCACGGCCGC-CCCUUGcaguaGgCGU- -5'
15763 5' -59.6 NC_004065.1 + 153627 0.67 0.812705
Target:  5'- cGGcGCCacucggacGGCGGcGAGC-UCAUCCGCGg -3'
miRNA:   3'- -CCaCGG--------CCGCCcCUUGcAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 196117 0.67 0.820855
Target:  5'- --cGCCaacGGCGGGu-ACGgCAUCCGCGg -3'
miRNA:   3'- ccaCGG---CCGCCCcuUGCaGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 154450 0.67 0.820855
Target:  5'- --cGCCGGCGacacGAACGUCAcggCCGCc -3'
miRNA:   3'- ccaCGGCCGCcc--CUUGCAGUa--GGCGu -5'
15763 5' -59.6 NC_004065.1 + 79650 0.67 0.828853
Target:  5'- cGUGUCGGCGcugaugacccGGGAggugccgaACGUgcccgaCAUCCGCAu -3'
miRNA:   3'- cCACGGCCGC----------CCCU--------UGCA------GUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 181980 0.67 0.828853
Target:  5'- gGGUGUCcGUGGGGGAUGagGacCCGCAg -3'
miRNA:   3'- -CCACGGcCGCCCCUUGCagUa-GGCGU- -5'
15763 5' -59.6 NC_004065.1 + 166151 0.68 0.769914
Target:  5'- gGGUGaCGuGCGGGuGGugGUCcUUCGCGa -3'
miRNA:   3'- -CCACgGC-CGCCC-CUugCAGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 208021 0.69 0.715056
Target:  5'- aGUGCCGGCGGcGAugacCGUCGgcguggCCGUg -3'
miRNA:   3'- cCACGGCCGCCcCUu---GCAGUa-----GGCGu -5'
15763 5' -59.6 NC_004065.1 + 119612 0.69 0.714118
Target:  5'- --cGCCGGCGGcGGAGgagacgcCGUCggCCGUg -3'
miRNA:   3'- ccaCGGCCGCC-CCUU-------GCAGuaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 203509 0.74 0.452621
Target:  5'- uGUGCCGGCGGGGucCGUCG--CGUg -3'
miRNA:   3'- cCACGGCCGCCCCuuGCAGUagGCGu -5'
15763 5' -59.6 NC_004065.1 + 146031 0.73 0.496921
Target:  5'- --aGCUGGCGGGcGACGUCAU-CGCGa -3'
miRNA:   3'- ccaCGGCCGCCCcUUGCAGUAgGCGU- -5'
15763 5' -59.6 NC_004065.1 + 33013 0.7 0.638667
Target:  5'- cGGUcGUCGGUc-GGAuCGUCAUCCGCAa -3'
miRNA:   3'- -CCA-CGGCCGccCCUuGCAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 79497 0.7 0.648305
Target:  5'- cGUGUCGGUGGGGGugGUuccCAUCgccgagguaCGCAc -3'
miRNA:   3'- cCACGGCCGCCCCUugCA---GUAG---------GCGU- -5'
15763 5' -59.6 NC_004065.1 + 104916 0.69 0.686675
Target:  5'- uGGUGCCGGCGGcGuacACG-CAcuaCCGCAa -3'
miRNA:   3'- -CCACGGCCGCCcCu--UGCaGUa--GGCGU- -5'
15763 5' -59.6 NC_004065.1 + 229512 0.69 0.686675
Target:  5'- --cGCUGGCGGGGcGCcUCAccccgccuUCCGCGg -3'
miRNA:   3'- ccaCGGCCGCCCCuUGcAGU--------AGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 127487 0.69 0.686675
Target:  5'- cGG-GCgCGGC-GGGAGCGUUGUCCaGCu -3'
miRNA:   3'- -CCaCG-GCCGcCCCUUGCAGUAGG-CGu -5'
15763 5' -59.6 NC_004065.1 + 103703 0.69 0.702815
Target:  5'- cGGUgGgCGGCGGGGAGCGccuggcgggcgugaUCGUgaGCAc -3'
miRNA:   3'- -CCA-CgGCCGCCCCUUGC--------------AGUAggCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.