Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15763 | 5' | -59.6 | NC_004065.1 | + | 147490 | 1.1 | 0.002204 |
Target: 5'- uGGUGCCGGCGGGGAACGUCAUCCGCAu -3' miRNA: 3'- -CCACGGCCGCCCCUUGCAGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 196117 | 0.67 | 0.820855 |
Target: 5'- --cGCCaacGGCGGGu-ACGgCAUCCGCGg -3' miRNA: 3'- ccaCGG---CCGCCCcuUGCaGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 79650 | 0.67 | 0.828853 |
Target: 5'- cGUGUCGGCGcugaugacccGGGAggugccgaACGUgcccgaCAUCCGCAu -3' miRNA: 3'- cCACGGCCGC----------CCCU--------UGCA------GUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 387 | 0.66 | 0.878052 |
Target: 5'- --cGCCGGCcGGGAugGcgCAcgagacgguguuuuUCCGCGc -3' miRNA: 3'- ccaCGGCCGcCCCUugCa-GU--------------AGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 79497 | 0.7 | 0.648305 |
Target: 5'- cGUGUCGGUGGGGGugGUuccCAUCgccgagguaCGCAc -3' miRNA: 3'- cCACGGCCGCCCCUugCA---GUAG---------GCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 104916 | 0.69 | 0.686675 |
Target: 5'- uGGUGCCGGCGGcGuacACG-CAcuaCCGCAa -3' miRNA: 3'- -CCACGGCCGCCcCu--UGCaGUa--GGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 127487 | 0.69 | 0.686675 |
Target: 5'- cGG-GCgCGGC-GGGAGCGUUGUCCaGCu -3' miRNA: 3'- -CCaCG-GCCGcCCCUUGCAGUAGG-CGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 103703 | 0.69 | 0.702815 |
Target: 5'- cGGUgGgCGGCGGGGAGCGccuggcgggcgugaUCGUgaGCAc -3' miRNA: 3'- -CCA-CgGCCGCCCCUUGC--------------AGUAggCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 166151 | 0.68 | 0.769914 |
Target: 5'- gGGUGaCGuGCGGGuGGugGUCcUUCGCGa -3' miRNA: 3'- -CCACgGC-CGCCC-CUugCAGuAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 153627 | 0.67 | 0.812705 |
Target: 5'- cGGcGCCacucggacGGCGGcGAGC-UCAUCCGCGg -3' miRNA: 3'- -CCaCGG--------CCGCCcCUUGcAGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 136677 | 0.67 | 0.795975 |
Target: 5'- cGGgucugGCCGGCGGcGGGcCGgcucgagcuuUUAUCCGCc -3' miRNA: 3'- -CCa----CGGCCGCC-CCUuGC----------AGUAGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 208021 | 0.69 | 0.715056 |
Target: 5'- aGUGCCGGCGGcGAugacCGUCGgcguggCCGUg -3' miRNA: 3'- cCACGGCCGCCcCUu---GCAGUa-----GGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 203509 | 0.74 | 0.452621 |
Target: 5'- uGUGCCGGCGGGGucCGUCG--CGUg -3' miRNA: 3'- cCACGGCCGCCCCuuGCAGUagGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 155407 | 0.67 | 0.80441 |
Target: 5'- cGGUGgCGGCGguuccGGGAAC-UCggCCGCc -3' miRNA: 3'- -CCACgGCCGC-----CCCUUGcAGuaGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 146031 | 0.73 | 0.496921 |
Target: 5'- --aGCUGGCGGGcGACGUCAU-CGCGa -3' miRNA: 3'- ccaCGGCCGCCCcUUGCAGUAgGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 119612 | 0.69 | 0.714118 |
Target: 5'- --cGCCGGCGGcGGAGgagacgcCGUCggCCGUg -3' miRNA: 3'- ccaCGGCCGCC-CCUU-------GCAGuaGGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 107770 | 0.67 | 0.812705 |
Target: 5'- cGGUGUCGGCGcGGGAGCag---CgGCGa -3' miRNA: 3'- -CCACGGCCGC-CCCUUGcaguaGgCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 154450 | 0.67 | 0.820855 |
Target: 5'- --cGCCGGCGacacGAACGUCAcggCCGCc -3' miRNA: 3'- ccaCGGCCGCcc--CUUGCAGUa--GGCGu -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 33013 | 0.7 | 0.638667 |
Target: 5'- cGGUcGUCGGUc-GGAuCGUCAUCCGCAa -3' miRNA: 3'- -CCA-CGGCCGccCCUuGCAGUAGGCGU- -5' |
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15763 | 5' | -59.6 | NC_004065.1 | + | 229512 | 0.69 | 0.686675 |
Target: 5'- --cGCUGGCGGGGcGCcUCAccccgccuUCCGCGg -3' miRNA: 3'- ccaCGGCCGCCCCuUGcAGU--------AGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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