miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15763 5' -59.6 NC_004065.1 + 79497 0.7 0.648305
Target:  5'- cGUGUCGGUGGGGGugGUuccCAUCgccgagguaCGCAc -3'
miRNA:   3'- cCACGGCCGCCCCUugCA---GUAG---------GCGU- -5'
15763 5' -59.6 NC_004065.1 + 207490 0.66 0.873296
Target:  5'- aGGUGggauCCGGaaCGGGGAAuacCGUUGUCCGgGu -3'
miRNA:   3'- -CCAC----GGCC--GCCCCUU---GCAGUAGGCgU- -5'
15763 5' -59.6 NC_004065.1 + 154450 0.67 0.820855
Target:  5'- --cGCCGGCGacacGAACGUCAcggCCGCc -3'
miRNA:   3'- ccaCGGCCGCcc--CUUGCAGUa--GGCGu -5'
15763 5' -59.6 NC_004065.1 + 33013 0.7 0.638667
Target:  5'- cGGUcGUCGGUc-GGAuCGUCAUCCGCAa -3'
miRNA:   3'- -CCA-CGGCCGccCCUuGCAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 146031 0.73 0.496921
Target:  5'- --aGCUGGCGGGcGACGUCAU-CGCGa -3'
miRNA:   3'- ccaCGGCCGCCCcUUGCAGUAgGCGU- -5'
15763 5' -59.6 NC_004065.1 + 203509 0.74 0.452621
Target:  5'- uGUGCCGGCGGGGucCGUCG--CGUg -3'
miRNA:   3'- cCACGGCCGCCCCuuGCAGUagGCGu -5'
15763 5' -59.6 NC_004065.1 + 167602 0.73 0.506017
Target:  5'- gGGUGCUGGCGGGGc-UGUCGUuaGUg -3'
miRNA:   3'- -CCACGGCCGCCCCuuGCAGUAggCGu -5'
15763 5' -59.6 NC_004065.1 + 54633 0.75 0.378717
Target:  5'- aGGa--CGGUGGGGGAuCGUCGUCCGCc -3'
miRNA:   3'- -CCacgGCCGCCCCUU-GCAGUAGGCGu -5'
15763 5' -59.6 NC_004065.1 + 119623 0.67 0.80441
Target:  5'- uGUGCCGGgaCGGGGAGCGag--CCGa- -3'
miRNA:   3'- cCACGGCC--GCCCCUUGCaguaGGCgu -5'
15763 5' -59.6 NC_004065.1 + 116987 0.67 0.795975
Target:  5'- gGGUGCUGGCGGaacagcGGAuauuCGUUgAUCgGCAc -3'
miRNA:   3'- -CCACGGCCGCC------CCUu---GCAG-UAGgCGU- -5'
15763 5' -59.6 NC_004065.1 + 115542 0.69 0.686675
Target:  5'- -aUGCgGGCGGGcGAGCGUCugucUCUGUc -3'
miRNA:   3'- ccACGgCCGCCC-CUUGCAGu---AGGCGu -5'
15763 5' -59.6 NC_004065.1 + 73120 0.69 0.682859
Target:  5'- cGGUGCCGGCGGaGGAuCGggaccccgaCGCGc -3'
miRNA:   3'- -CCACGGCCGCC-CCUuGCaguag----GCGU- -5'
15763 5' -59.6 NC_004065.1 + 128585 0.7 0.677125
Target:  5'- --cGUCGGCGGcGAagGCG-CAUCCGCAc -3'
miRNA:   3'- ccaCGGCCGCCcCU--UGCaGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 166149 0.7 0.638667
Target:  5'- cGGcGCCGGCGGcagcGGcgccGACGUCGUgcaCCGCGa -3'
miRNA:   3'- -CCaCGGCCGCC----CC----UUGCAGUA---GGCGU- -5'
15763 5' -59.6 NC_004065.1 + 120952 0.73 0.506017
Target:  5'- gGGU-CCGGguagcgGGGGAACGUgAUCCGCu -3'
miRNA:   3'- -CCAcGGCCg-----CCCCUUGCAgUAGGCGu -5'
15763 5' -59.6 NC_004065.1 + 75593 0.68 0.769914
Target:  5'- --cGCCGGCGGGGGGaGg---CCGCu -3'
miRNA:   3'- ccaCGGCCGCCCCUUgCaguaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 100402 0.68 0.77872
Target:  5'- --aGCCGGCGGGuccaGUUcUCCGCGc -3'
miRNA:   3'- ccaCGGCCGCCCcuugCAGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 172087 0.68 0.77872
Target:  5'- cGGU-UCGaGCGGGGGACGuagcgcggcUCcUCCGCAg -3'
miRNA:   3'- -CCAcGGC-CGCCCCUUGC---------AGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 174651 0.68 0.77872
Target:  5'- gGGUGCCGGaggacuGGGGu-CGUCG-CCGgGa -3'
miRNA:   3'- -CCACGGCCg-----CCCCuuGCAGUaGGCgU- -5'
15763 5' -59.6 NC_004065.1 + 29970 0.68 0.78741
Target:  5'- cGGUGCUGGCGGcGGcGGCGg---CgGCAg -3'
miRNA:   3'- -CCACGGCCGCC-CC-UUGCaguaGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.