miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15763 5' -59.6 NC_004065.1 + 117213 0.69 0.705648
Target:  5'- aGGUGauGGCGGGGAcggACGUCGcgaGCGa -3'
miRNA:   3'- -CCACggCCGCCCCU---UGCAGUaggCGU- -5'
15763 5' -59.6 NC_004065.1 + 187455 0.69 0.705648
Target:  5'- -uUGCCGGa---GAACGUCAUCUGCAa -3'
miRNA:   3'- ccACGGCCgcccCUUGCAGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 119623 0.67 0.80441
Target:  5'- uGUGCCGGgaCGGGGAGCGag--CCGa- -3'
miRNA:   3'- cCACGGCC--GCCCCUUGCaguaGGCgu -5'
15763 5' -59.6 NC_004065.1 + 116987 0.67 0.795975
Target:  5'- gGGUGCUGGCGGaacagcGGAuauuCGUUgAUCgGCAc -3'
miRNA:   3'- -CCACGGCCGCC------CCUu---GCAG-UAGgCGU- -5'
15763 5' -59.6 NC_004065.1 + 29970 0.68 0.78741
Target:  5'- cGGUGCUGGCGGcGGcGGCGg---CgGCAg -3'
miRNA:   3'- -CCACGGCCGCC-CC-UUGCaguaGgCGU- -5'
15763 5' -59.6 NC_004065.1 + 174651 0.68 0.77872
Target:  5'- gGGUGCCGGaggacuGGGGu-CGUCG-CCGgGa -3'
miRNA:   3'- -CCACGGCCg-----CCCCuuGCAGUaGGCgU- -5'
15763 5' -59.6 NC_004065.1 + 172087 0.68 0.77872
Target:  5'- cGGU-UCGaGCGGGGGACGuagcgcggcUCcUCCGCAg -3'
miRNA:   3'- -CCAcGGC-CGCCCCUUGC---------AGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 100402 0.68 0.77872
Target:  5'- --aGCCGGCGGGuccaGUUcUCCGCGc -3'
miRNA:   3'- ccaCGGCCGCCCcuugCAGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 75593 0.68 0.769914
Target:  5'- --cGCCGGCGGGGGGaGg---CCGCu -3'
miRNA:   3'- ccaCGGCCGCCCCUUgCaguaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 197269 0.68 0.760999
Target:  5'- gGGUGCCGGaucaucggucaCGGGGAGCGaC-UCC-CAc -3'
miRNA:   3'- -CCACGGCC-----------GCCCCUUGCaGuAGGcGU- -5'
15763 5' -59.6 NC_004065.1 + 107770 0.69 0.733675
Target:  5'- --gGCCGGCGGGGG--GUUAggacgCCGCc -3'
miRNA:   3'- ccaCGGCCGCCCCUugCAGUa----GGCGu -5'
15763 5' -59.6 NC_004065.1 + 149905 0.67 0.820047
Target:  5'- gGGUGCCGGUuggaugaGGGGcGCG-CGgcUCgGCAg -3'
miRNA:   3'- -CCACGGCCG-------CCCCuUGCaGU--AGgCGU- -5'
15763 5' -59.6 NC_004065.1 + 43331 0.66 0.880061
Target:  5'- --gGcCCGGCGGGGAcgccccACG-CG-CCGCGu -3'
miRNA:   3'- ccaC-GGCCGCCCCU------UGCaGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 120171 0.66 0.873296
Target:  5'- aGUGCCaccugGGUgaGGGGAGCGaCG-CCGCGc -3'
miRNA:   3'- cCACGG-----CCG--CCCCUUGCaGUaGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 76753 0.66 0.866339
Target:  5'- cGGcGCCGGCGGccu-CGUCAUCguccggCGCAu -3'
miRNA:   3'- -CCaCGGCCGCCccuuGCAGUAG------GCGU- -5'
15763 5' -59.6 NC_004065.1 + 81997 0.66 0.866339
Target:  5'- --cGgCGGCGGGGAagGCGccCGUgCCGCu -3'
miRNA:   3'- ccaCgGCCGCCCCU--UGCa-GUA-GGCGu -5'
15763 5' -59.6 NC_004065.1 + 221861 0.66 0.859195
Target:  5'- uGGUGCUGGUGGGaaucguucuucaGAugGcCuUCUGCGu -3'
miRNA:   3'- -CCACGGCCGCCC------------CUugCaGuAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 30587 0.66 0.851869
Target:  5'- --cGCC-GCGGcGAGCGccUCGUCCGCGu -3'
miRNA:   3'- ccaCGGcCGCCcCUUGC--AGUAGGCGU- -5'
15763 5' -59.6 NC_004065.1 + 122233 0.66 0.844366
Target:  5'- cGG-GCCGGCGGGucguuccUGUCG-CCGCu -3'
miRNA:   3'- -CCaCGGCCGCCCcuu----GCAGUaGGCGu -5'
15763 5' -59.6 NC_004065.1 + 148594 0.66 0.844366
Target:  5'- uGGUGCCGGUcaGGAAgGUCAccaggugcUCCaGCGu -3'
miRNA:   3'- -CCACGGCCGccCCUUgCAGU--------AGG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.