miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15764 3' -56.8 NC_004065.1 + 80970 0.66 0.947606
Target:  5'- ---cGAUCGGCcUGCcgccGCCGUCGUc -3'
miRNA:   3'- accaCUAGCCGcACGau--CGGCAGCAc -5'
15764 3' -56.8 NC_004065.1 + 41434 0.66 0.943335
Target:  5'- cGGaccGAgaCGGgGUGCUGGCCGUgGa- -3'
miRNA:   3'- aCCa--CUa-GCCgCACGAUCGGCAgCac -5'
15764 3' -56.8 NC_004065.1 + 88382 0.66 0.938843
Target:  5'- aGGUGG-CGGUGUagGCcAGCUGgcgCGUGa -3'
miRNA:   3'- aCCACUaGCCGCA--CGaUCGGCa--GCAC- -5'
15764 3' -56.8 NC_004065.1 + 154155 0.66 0.934128
Target:  5'- cGGUGGcggCGGCGgcgGCggcGGCUGUUGcUGg -3'
miRNA:   3'- aCCACUa--GCCGCa--CGa--UCGGCAGC-AC- -5'
15764 3' -56.8 NC_004065.1 + 62871 0.66 0.924029
Target:  5'- cGGUGuggCGGUcUGCUGGCCucccugcccGUCGUc -3'
miRNA:   3'- aCCACua-GCCGcACGAUCGG---------CAGCAc -5'
15764 3' -56.8 NC_004065.1 + 192293 0.67 0.913033
Target:  5'- gGGUGAU-GGUGUugUGGUCGUCGUa -3'
miRNA:   3'- aCCACUAgCCGCAcgAUCGGCAGCAc -5'
15764 3' -56.8 NC_004065.1 + 27834 0.67 0.907202
Target:  5'- cGG-GGU-GGUG-GCUGGCCGUgGUGc -3'
miRNA:   3'- aCCaCUAgCCGCaCGAUCGGCAgCAC- -5'
15764 3' -56.8 NC_004065.1 + 225740 0.67 0.89488
Target:  5'- gGGUGAUUGuaGUGgUGGUCGUC-UGg -3'
miRNA:   3'- aCCACUAGCcgCACgAUCGGCAGcAC- -5'
15764 3' -56.8 NC_004065.1 + 185063 0.68 0.874793
Target:  5'- gGGUcgcugucgaaGGUCGGUGUGCUcuucGCCGUCu-- -3'
miRNA:   3'- aCCA----------CUAGCCGCACGAu---CGGCAGcac -5'
15764 3' -56.8 NC_004065.1 + 68160 0.68 0.874793
Target:  5'- cGGUGAUcgcggCGGCGcGCgcgacggAGCUGUCGg- -3'
miRNA:   3'- aCCACUA-----GCCGCaCGa------UCGGCAGCac -5'
15764 3' -56.8 NC_004065.1 + 47653 0.68 0.860378
Target:  5'- aUGGUGGUCaGGCugGUGUcgcAGUCGUCGUc -3'
miRNA:   3'- -ACCACUAG-CCG--CACGa--UCGGCAGCAc -5'
15764 3' -56.8 NC_004065.1 + 146589 0.68 0.852878
Target:  5'- aGGgGAUCGGgGUgGCcaucggGGCCGUCGg- -3'
miRNA:   3'- aCCaCUAGCCgCA-CGa-----UCGGCAGCac -5'
15764 3' -56.8 NC_004065.1 + 26673 0.69 0.834126
Target:  5'- aGGUGAUCGGCGUcaagaccguacaaCUAGaCGUCGg- -3'
miRNA:   3'- aCCACUAGCCGCAc------------GAUCgGCAGCac -5'
15764 3' -56.8 NC_004065.1 + 26153 0.69 0.829279
Target:  5'- cGG-GGUCuGCGUGCcAGCCGUCc-- -3'
miRNA:   3'- aCCaCUAGcCGCACGaUCGGCAGcac -5'
15764 3' -56.8 NC_004065.1 + 198373 0.69 0.829279
Target:  5'- gGGUGGUCGGCGUcaacGCCGUgGg- -3'
miRNA:   3'- aCCACUAGCCGCAcgauCGGCAgCac -5'
15764 3' -56.8 NC_004065.1 + 29514 0.69 0.80417
Target:  5'- cGGUGAcgcCGGCGcUGC-AGCCGUcCGUc -3'
miRNA:   3'- aCCACUa--GCCGC-ACGaUCGGCA-GCAc -5'
15764 3' -56.8 NC_004065.1 + 8285 0.7 0.786687
Target:  5'- cGGacUGAUCGGggccgcgGUGUUAGCgGUCGUGu -3'
miRNA:   3'- aCC--ACUAGCCg------CACGAUCGgCAGCAC- -5'
15764 3' -56.8 NC_004065.1 + 57436 0.71 0.712205
Target:  5'- ---cGAUCGGCGUuuucGCUucuucgacGCCGUCGUGg -3'
miRNA:   3'- accaCUAGCCGCA----CGAu-------CGGCAGCAC- -5'
15764 3' -56.8 NC_004065.1 + 30982 0.71 0.712205
Target:  5'- gGGUGGUUGGUGUGUgugugcGCCGggGUGg -3'
miRNA:   3'- aCCACUAGCCGCACGau----CGGCagCAC- -5'
15764 3' -56.8 NC_004065.1 + 203010 0.72 0.692779
Target:  5'- gGGUGGUaagauuggCGGCGUGgaGGCUGUUGUu -3'
miRNA:   3'- aCCACUA--------GCCGCACgaUCGGCAGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.