miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15764 5' -62.5 NC_004065.1 + 159718 0.66 0.739041
Target:  5'- -gUACGcGGCcguGUGGggggugcugcugaaGGCCGCCGCg -3'
miRNA:   3'- aaGUGCuCCGu--CGCCag------------CCGGCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 202854 0.66 0.738127
Target:  5'- -aCACGAcGGCAGgGcGUUuuGCCGCgGCg -3'
miRNA:   3'- aaGUGCU-CCGUCgC-CAGc-CGGCGgCG- -5'
15764 5' -62.5 NC_004065.1 + 70948 0.66 0.738127
Target:  5'- -aCACGccGGGUcgcGGCGGUCGGUCcagaUCGCg -3'
miRNA:   3'- aaGUGC--UCCG---UCGCCAGCCGGc---GGCG- -5'
15764 5' -62.5 NC_004065.1 + 142473 0.66 0.738127
Target:  5'- aUUCGCGGGGacaGGCGGcuaaccccgUCuGGCacgCGCUGCg -3'
miRNA:   3'- -AAGUGCUCCg--UCGCC---------AG-CCG---GCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 11962 0.66 0.738127
Target:  5'- -cCAUG-GGCAGCgaGGUCcggugaugcuGGUgGCCGCg -3'
miRNA:   3'- aaGUGCuCCGUCG--CCAG----------CCGgCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 184817 0.66 0.738127
Target:  5'- --aACGGuGGCGGUGG-CGGCaGCgGCg -3'
miRNA:   3'- aagUGCU-CCGUCGCCaGCCGgCGgCG- -5'
15764 5' -62.5 NC_004065.1 + 121829 0.66 0.735379
Target:  5'- --gACgGAGGUGGCGGggaugucugggguuUCGGUCguGCCGCg -3'
miRNA:   3'- aagUG-CUCCGUCGCC--------------AGCCGG--CGGCG- -5'
15764 5' -62.5 NC_004065.1 + 96994 0.66 0.72894
Target:  5'- gUCGCGcuGCuGCGacGUCuGCUGCCGCu -3'
miRNA:   3'- aAGUGCucCGuCGC--CAGcCGGCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 212951 0.66 0.72894
Target:  5'- gUCG-GAGGUGGCGGUCGGagagGCgGUa -3'
miRNA:   3'- aAGUgCUCCGUCGCCAGCCgg--CGgCG- -5'
15764 5' -62.5 NC_004065.1 + 105546 0.66 0.72894
Target:  5'- -gCGCGgcccuggacccGGcGCAGCGGcaCGGCgCGCCGUc -3'
miRNA:   3'- aaGUGC-----------UC-CGUCGCCa-GCCG-GCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 109900 0.66 0.72894
Target:  5'- gUCGgGGGGUccCGGcUCGuCCGCCGCg -3'
miRNA:   3'- aAGUgCUCCGucGCC-AGCcGGCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 63699 0.66 0.728017
Target:  5'- -gCACGAagaagcgGGCcgugaucgccuGGUGGUCGGC-GCCGUa -3'
miRNA:   3'- aaGUGCU-------CCG-----------UCGCCAGCCGgCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 76156 0.66 0.719679
Target:  5'- -aCACGAaGCAaGCGGUC--CUGCCGCu -3'
miRNA:   3'- aaGUGCUcCGU-CGCCAGccGGCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 200425 0.66 0.719679
Target:  5'- -cCGCGAaguccugcaGGaCcGCGGUcaccgCGGCCGCCGUc -3'
miRNA:   3'- aaGUGCU---------CC-GuCGCCA-----GCCGGCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 37885 0.66 0.719679
Target:  5'- -gCGCGgaAGGCcGUcuGG-CGGCCGUCGCu -3'
miRNA:   3'- aaGUGC--UCCGuCG--CCaGCCGGCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 24576 0.66 0.719679
Target:  5'- aUCGCGcGGUccgcGCGuGUCGucgccgccaccGCCGCCGCc -3'
miRNA:   3'- aAGUGCuCCGu---CGC-CAGC-----------CGGCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 120109 0.66 0.712223
Target:  5'- -aCGCGAcGGCGGCcgcggcggacgagccGGgaccccccgacgCGGCCGCgGCg -3'
miRNA:   3'- aaGUGCU-CCGUCG---------------CCa-----------GCCGGCGgCG- -5'
15764 5' -62.5 NC_004065.1 + 17775 0.66 0.710353
Target:  5'- --aGCGgcuuAGaCAGCGGgUGGCCGUCGCg -3'
miRNA:   3'- aagUGC----UCcGUCGCCaGCCGGCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 62120 0.66 0.710353
Target:  5'- cUCGCggGAGGCGGCa-UC-GUCGCCGCg -3'
miRNA:   3'- aAGUG--CUCCGUCGccAGcCGGCGGCG- -5'
15764 5' -62.5 NC_004065.1 + 187977 0.66 0.710353
Target:  5'- ----aGAGGguGCaGcugCGGCCGCgCGCa -3'
miRNA:   3'- aagugCUCCguCGcCa--GCCGGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.