miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15765 3' -48.6 NC_004065.1 + 188485 0.66 0.999944
Target:  5'- aCCUGCCUUucu-C-UUGACAgauaGGCCg -3'
miRNA:   3'- gGGACGGGAuauuGcAAUUGUa---CCGG- -5'
15765 3' -48.6 NC_004065.1 + 194940 0.66 0.999944
Target:  5'- aUCUGCUCUAUAuCGUcuccgAACggGGUCu -3'
miRNA:   3'- gGGACGGGAUAUuGCAa----UUGuaCCGG- -5'
15765 3' -48.6 NC_004065.1 + 52734 0.66 0.999944
Target:  5'- aCUCUGUUCUGUGA----GGCcgGGCCu -3'
miRNA:   3'- -GGGACGGGAUAUUgcaaUUGuaCCGG- -5'
15765 3' -48.6 NC_004065.1 + 29083 0.66 0.999934
Target:  5'- aUCUUGUCCUGUgaagaacaccggacuGACGUgggGACAcuugggaGGCCg -3'
miRNA:   3'- -GGGACGGGAUA---------------UUGCAa--UUGUa------CCGG- -5'
15765 3' -48.6 NC_004065.1 + 117132 0.66 0.999926
Target:  5'- aCCUGaUCCg--GACGgaGACG-GGCCu -3'
miRNA:   3'- gGGAC-GGGauaUUGCaaUUGUaCCGG- -5'
15765 3' -48.6 NC_004065.1 + 40126 0.66 0.999926
Target:  5'- aCCCUGCCgUGUu-CGUcgauccaGACGgcGGCCu -3'
miRNA:   3'- -GGGACGGgAUAuuGCAa------UUGUa-CCGG- -5'
15765 3' -48.6 NC_004065.1 + 194806 0.66 0.999926
Target:  5'- gUCgaGCCCcugAACGccgUGGCGgUGGCCg -3'
miRNA:   3'- -GGgaCGGGauaUUGCa--AUUGU-ACCGG- -5'
15765 3' -48.6 NC_004065.1 + 51233 0.66 0.999904
Target:  5'- uCCCUGCUggAUGGCGc-----UGGCCg -3'
miRNA:   3'- -GGGACGGgaUAUUGCaauuguACCGG- -5'
15765 3' -48.6 NC_004065.1 + 122623 0.66 0.999904
Target:  5'- uCCCaGUCCga-GACGgaGACGaGGCCc -3'
miRNA:   3'- -GGGaCGGGauaUUGCaaUUGUaCCGG- -5'
15765 3' -48.6 NC_004065.1 + 26106 0.66 0.999904
Target:  5'- aCCCUGCCCagaGAUGgaGACGUG-Ca -3'
miRNA:   3'- -GGGACGGGauaUUGCaaUUGUACcGg -5'
15765 3' -48.6 NC_004065.1 + 198926 0.66 0.999904
Target:  5'- gCCUGCCCgcuccacccUGGCGgc--CAaGGCCg -3'
miRNA:   3'- gGGACGGGau-------AUUGCaauuGUaCCGG- -5'
15765 3' -48.6 NC_004065.1 + 82677 0.66 0.999875
Target:  5'- cUCCUGgCCgagaGGCGcagcauguGCGUGGCCa -3'
miRNA:   3'- -GGGACgGGaua-UUGCaau-----UGUACCGG- -5'
15765 3' -48.6 NC_004065.1 + 44777 0.66 0.999875
Target:  5'- aCCCgcGCCCgggAACGUUguccGACGUGuCCu -3'
miRNA:   3'- -GGGa-CGGGauaUUGCAA----UUGUACcGG- -5'
15765 3' -48.6 NC_004065.1 + 75710 0.66 0.999875
Target:  5'- cUCCUGCguaUCUuc-GCGUgagAACcgGGCCg -3'
miRNA:   3'- -GGGACG---GGAuauUGCAa--UUGuaCCGG- -5'
15765 3' -48.6 NC_004065.1 + 110681 0.66 0.999839
Target:  5'- uUCUUGCCUgugGUGAgugUGACGUGaGCCg -3'
miRNA:   3'- -GGGACGGGa--UAUUgcaAUUGUAC-CGG- -5'
15765 3' -48.6 NC_004065.1 + 101978 0.66 0.999839
Target:  5'- gUCCUcaggGCCgacgagGACGUcGAUAUGGCCg -3'
miRNA:   3'- -GGGA----CGGgaua--UUGCAaUUGUACCGG- -5'
15765 3' -48.6 NC_004065.1 + 204736 0.66 0.999839
Target:  5'- gCUUGCCCUccgGUAGgGUguacgcccGACA-GGCCg -3'
miRNA:   3'- gGGACGGGA---UAUUgCAa-------UUGUaCCGG- -5'
15765 3' -48.6 NC_004065.1 + 27817 0.66 0.999839
Target:  5'- gCCCaGCCCUccGAUGUgccuGCGggugcucGGCCg -3'
miRNA:   3'- -GGGaCGGGAuaUUGCAau--UGUa------CCGG- -5'
15765 3' -48.6 NC_004065.1 + 93473 0.67 0.99974
Target:  5'- aCCCUGCauaGUGACGgUGGC--GGCCu -3'
miRNA:   3'- -GGGACGggaUAUUGCaAUUGuaCCGG- -5'
15765 3' -48.6 NC_004065.1 + 112633 0.67 0.999673
Target:  5'- gCCCaGCgCgcgcggccgAGCGUcGAUAUGGCCg -3'
miRNA:   3'- -GGGaCGgGaua------UUGCAaUUGUACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.