miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15765 5' -57.8 NC_004065.1 + 204544 0.66 0.903982
Target:  5'- -aGACGCCucgucgggcGGCGggaggUGCUGCGCGUCu -3'
miRNA:   3'- uaUUGCGG---------CCGUagg--ACGGCGUGCAG- -5'
15765 5' -57.8 NC_004065.1 + 99934 0.66 0.903982
Target:  5'- cAUGACGCCGGa--CC-GCCGCGgCGg- -3'
miRNA:   3'- -UAUUGCGGCCguaGGaCGGCGU-GCag -5'
15765 5' -57.8 NC_004065.1 + 118438 0.66 0.903982
Target:  5'- --cACGgCGGCGUCCUcgucuuccucgGCCGgGCGg- -3'
miRNA:   3'- uauUGCgGCCGUAGGA-----------CGGCgUGCag -5'
15765 5' -57.8 NC_004065.1 + 78235 0.66 0.903982
Target:  5'- -gAGCGCggagaGGaCGUCCaUGCCGCgcugcACGUCc -3'
miRNA:   3'- uaUUGCGg----CC-GUAGG-ACGGCG-----UGCAG- -5'
15765 5' -57.8 NC_004065.1 + 108665 0.66 0.903982
Target:  5'- cUGGCGcCCGuGCGgauggaCCUGCUGUGCGUg -3'
miRNA:   3'- uAUUGC-GGC-CGUa-----GGACGGCGUGCAg -5'
15765 5' -57.8 NC_004065.1 + 97271 0.66 0.903982
Target:  5'- --cGCGCCGGUAgg-UGCCGUugGg- -3'
miRNA:   3'- uauUGCGGCCGUaggACGGCGugCag -5'
15765 5' -57.8 NC_004065.1 + 184834 0.66 0.903982
Target:  5'- -cAGCGgCGGCGUguugccCCUGUCGgauaACGUCg -3'
miRNA:   3'- uaUUGCgGCCGUA------GGACGGCg---UGCAG- -5'
15765 5' -57.8 NC_004065.1 + 163419 0.66 0.903982
Target:  5'- -gAGCGUCGGCAacgCCgcggugGCCGC-CGcCg -3'
miRNA:   3'- uaUUGCGGCCGUa--GGa-----CGGCGuGCaG- -5'
15765 5' -57.8 NC_004065.1 + 61680 0.66 0.903982
Target:  5'- -gAGCGCgaGGgGUCC-GCaGCGCGUCa -3'
miRNA:   3'- uaUUGCGg-CCgUAGGaCGgCGUGCAG- -5'
15765 5' -57.8 NC_004065.1 + 45160 0.66 0.897772
Target:  5'- -----cCCGGCGUCCcGCCGCcCGcUCg -3'
miRNA:   3'- uauugcGGCCGUAGGaCGGCGuGC-AG- -5'
15765 5' -57.8 NC_004065.1 + 33615 0.66 0.897772
Target:  5'- --cAUGuuGcGCAUCCUGUCGUGCagGUCg -3'
miRNA:   3'- uauUGCggC-CGUAGGACGGCGUG--CAG- -5'
15765 5' -57.8 NC_004065.1 + 171402 0.66 0.897772
Target:  5'- --cGCGagaCCGGCGacUCC-GCCGCgcGCGUCg -3'
miRNA:   3'- uauUGC---GGCCGU--AGGaCGGCG--UGCAG- -5'
15765 5' -57.8 NC_004065.1 + 37970 0.66 0.897139
Target:  5'- ---cCGCCGuGUAaCCUGCCggguugcGUACGUCa -3'
miRNA:   3'- uauuGCGGC-CGUaGGACGG-------CGUGCAG- -5'
15765 5' -57.8 NC_004065.1 + 131355 0.66 0.893941
Target:  5'- --cGCGCgGGCGUCCcccccgucagcaaCCGCGCGUa -3'
miRNA:   3'- uauUGCGgCCGUAGGac-----------GGCGUGCAg -5'
15765 5' -57.8 NC_004065.1 + 192810 0.66 0.891344
Target:  5'- -aGACGgCGGCGUCUgggcGCUGCGCu-- -3'
miRNA:   3'- uaUUGCgGCCGUAGGa---CGGCGUGcag -5'
15765 5' -57.8 NC_004065.1 + 182736 0.66 0.891344
Target:  5'- -cGACGCCGGgG-CCa-CCGaCACGUCg -3'
miRNA:   3'- uaUUGCGGCCgUaGGacGGC-GUGCAG- -5'
15765 5' -57.8 NC_004065.1 + 114009 0.66 0.891344
Target:  5'- ---cCGUCGGCAgagagCUGCCcccgcggcGCACGUCg -3'
miRNA:   3'- uauuGCGGCCGUag---GACGG--------CGUGCAG- -5'
15765 5' -57.8 NC_004065.1 + 177488 0.66 0.891344
Target:  5'- -gGGCGCaCGGCGgggCC-GCCGgGgGUCa -3'
miRNA:   3'- uaUUGCG-GCCGUa--GGaCGGCgUgCAG- -5'
15765 5' -57.8 NC_004065.1 + 91607 0.66 0.890689
Target:  5'- -----aUCGGCGUCCUGaCCGCGCcgcagaaGUCg -3'
miRNA:   3'- uauugcGGCCGUAGGAC-GGCGUG-------CAG- -5'
15765 5' -57.8 NC_004065.1 + 119609 0.66 0.890032
Target:  5'- -gGACGCCGGCGgcggaggagacgCCgucgGCCGUgGCGUg -3'
miRNA:   3'- uaUUGCGGCCGUa-----------GGa---CGGCG-UGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.