miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15766 3' -55.3 NC_004065.1 + 131760 0.66 0.977158
Target:  5'- ------gCGAGGCGCG-CGcccaGGGCCGc -3'
miRNA:   3'- gacaaaaGCUCCGCGCuGC----UCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 127383 0.66 0.977158
Target:  5'- uUGUUccUCGAGGuCGCGACGccuuCCGAc -3'
miRNA:   3'- gACAAa-AGCUCC-GCGCUGCucc-GGCU- -5'
15766 3' -55.3 NC_004065.1 + 168177 0.66 0.977158
Target:  5'- ------gCGGGGCGCGACaGcGGCgCGAc -3'
miRNA:   3'- gacaaaaGCUCCGCGCUG-CuCCG-GCU- -5'
15766 3' -55.3 NC_004065.1 + 30997 0.66 0.977158
Target:  5'- gUGUgcgcCGGGGUgGCGAgauggaGAGGCCGGu -3'
miRNA:   3'- gACAaaa-GCUCCG-CGCUg-----CUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 140139 0.66 0.977158
Target:  5'- uUGgugUUCGGGGC-CGACGAuGGCg-- -3'
miRNA:   3'- gACaa-AAGCUCCGcGCUGCU-CCGgcu -5'
15766 3' -55.3 NC_004065.1 + 226124 0.66 0.977158
Target:  5'- -aGg---CGGGGgucgcCGCGugGAGGCUGGc -3'
miRNA:   3'- gaCaaaaGCUCC-----GCGCugCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 143294 0.66 0.974735
Target:  5'- ------cCGAGGCgGCGuCgGGGGCCGGg -3'
miRNA:   3'- gacaaaaGCUCCG-CGCuG-CUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 176791 0.66 0.974735
Target:  5'- -gGUUUgaggCGAGGCGCGuGCGccAGaCCGAu -3'
miRNA:   3'- gaCAAAa---GCUCCGCGC-UGC--UCcGGCU- -5'
15766 3' -55.3 NC_004065.1 + 24681 0.66 0.974735
Target:  5'- -----aUCgGAGGCGaCGACGcuGCCGAu -3'
miRNA:   3'- gacaaaAG-CUCCGC-GCUGCucCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 143061 0.66 0.972132
Target:  5'- uCUGgg--CGAGGgGCGcuuCGGGGgCGAc -3'
miRNA:   3'- -GACaaaaGCUCCgCGCu--GCUCCgGCU- -5'
15766 3' -55.3 NC_004065.1 + 201699 0.66 0.972132
Target:  5'- ---cUUUCGAGacGCGUaucgGAUGAGGCCGu -3'
miRNA:   3'- gacaAAAGCUC--CGCG----CUGCUCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 103290 0.66 0.972132
Target:  5'- -gGUUcUUCGAGGCccGCGGCGgcAGGCUc- -3'
miRNA:   3'- gaCAA-AAGCUCCG--CGCUGC--UCCGGcu -5'
15766 3' -55.3 NC_004065.1 + 89349 0.66 0.969339
Target:  5'- -----cUCGAGGCaCGAC-AGGCCGc -3'
miRNA:   3'- gacaaaAGCUCCGcGCUGcUCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 167582 0.66 0.969339
Target:  5'- uUGUUgUCGAcgucugaugugGGUGCuGGCGGGGCUGu -3'
miRNA:   3'- gACAAaAGCU-----------CCGCG-CUGCUCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 147252 0.66 0.969339
Target:  5'- gUGUUguaUGAuGGUGCGACGGGGUUa- -3'
miRNA:   3'- gACAAaa-GCU-CCGCGCUGCUCCGGcu -5'
15766 3' -55.3 NC_004065.1 + 102013 0.66 0.966354
Target:  5'- -aGg--UCGuaguuGGCGCGGCG-GGCCa- -3'
miRNA:   3'- gaCaaaAGCu----CCGCGCUGCuCCGGcu -5'
15766 3' -55.3 NC_004065.1 + 38159 0.66 0.966044
Target:  5'- aCUGguaUCGGGGCGCcaucgcGGCGAuagucgcGGCCGu -3'
miRNA:   3'- -GACaaaAGCUCCGCG------CUGCU-------CCGGCu -5'
15766 3' -55.3 NC_004065.1 + 130183 0.66 0.963168
Target:  5'- -----aUCGGGGCGCaGACGcugaaacgccuGGCCGGc -3'
miRNA:   3'- gacaaaAGCUCCGCG-CUGCu----------CCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 114863 0.66 0.963168
Target:  5'- -----gUCGGGGCGCGGCGc--CCGAc -3'
miRNA:   3'- gacaaaAGCUCCGCGCUGCuccGGCU- -5'
15766 3' -55.3 NC_004065.1 + 74139 0.66 0.963168
Target:  5'- -----gUCGAGGCGgGugccCG-GGCCGAg -3'
miRNA:   3'- gacaaaAGCUCCGCgCu---GCuCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.